- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 31 residues within 4Å:- Chain A: V.6, G.7, Y.9, G.10, I.11, V.12, H.56, E.57, I.58, R.59, H.71, T.99, C.103, L.110, V.147, A.148, S.149, T.150, A.181, Y.185, F.199, T.200, P.201, D.225, G.226, T.228, Y.260, D.261, D.332, A.336
- Ligands: GOL.3
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:T.228
- Hydrogen bonds: A:Y.9, A:I.11, A:V.12, A:R.59, A:R.59, A:H.71, A:S.149, A:T.150, A:T.150, A:Y.185, A:Y.185, A:T.228
- Water bridges: A:S.149, A:E.151, A:D.261
- pi-Stacking: A:F.199
NAD.7: 34 residues within 4Å:- Chain B: V.6, G.7, Y.9, G.10, I.11, V.12, H.56, E.57, I.58, R.59, H.71, T.99, A.100, C.103, L.110, V.147, A.148, S.149, T.150, A.181, Y.185, F.199, T.200, P.201, D.225, G.226, T.228, Y.260, D.261, D.332, A.336, K.367
- Ligands: PO4.6, GOL.8
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:G.7, B:I.11, B:V.12, B:R.59, B:H.71, B:T.99, B:S.149, B:T.150, B:T.150, B:T.150, B:T.228, B:D.332
- Water bridges: B:S.13, B:S.149, B:D.261
NAD.12: 31 residues within 4Å:- Chain C: G.7, Y.9, G.10, I.11, V.12, H.56, E.57, I.58, R.59, H.71, T.99, C.103, L.110, V.147, A.148, S.149, T.150, A.181, Y.185, F.199, T.200, P.201, D.225, G.226, T.228, Y.260, D.261, D.332, A.336, K.367
- Ligands: K.16
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:F.199, C:T.228
- Hydrogen bonds: C:Y.9, C:I.11, C:V.12, C:I.58, C:R.59, C:R.59, C:T.99, C:S.149, C:T.150, C:T.150, C:T.150, C:D.261, C:D.261, C:D.332, C:D.332
- Water bridges: C:S.13, C:H.71
NAD.18: 33 residues within 4Å:- Chain D: G.7, Y.9, G.10, I.11, V.12, H.56, E.57, I.58, R.59, H.71, T.99, A.100, C.103, L.110, V.147, A.148, S.149, T.150, A.181, Y.185, F.199, T.200, P.201, D.225, G.226, T.228, Y.260, D.261, K.274, D.332, A.336, K.367
- Ligands: K.21
19 PLIP interactions:19 interactions with chain D- Hydrophobic interactions: D:T.228
- Hydrogen bonds: D:Y.9, D:I.11, D:V.12, D:I.58, D:R.59, D:R.59, D:T.99, D:S.149, D:T.150, D:T.150, D:Y.185, D:T.228, D:D.332
- Water bridges: D:G.10, D:S.13, D:D.261, D:D.261
- Salt bridges: D:H.71
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: D.261, L.265, K.274, I.296, K.306, D.332
- Ligands: PO4.1, NAD.2
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.261, A:K.274, A:K.306, A:K.306
GOL.8: 8 residues within 4Å:- Chain B: D.261, L.265, K.274, I.296, K.306, D.332, K.367
- Ligands: NAD.7
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.150, B:D.261, B:K.306, B:K.306, B:K.367
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: K.360, D.371, T.372, N.373, V.374
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.371, A:N.373, A:N.373, A:V.374
- Salt bridges: A:K.360
SO4.9: 4 residues within 4Å:- Chain B: K.211, P.369, M.370, D.371
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.371, B:D.371, B:D.371
- Salt bridges: B:K.211
SO4.10: 4 residues within 4Å:- Chain B: K.360, T.372, N.373, V.374
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.372, B:T.372, B:N.373, B:N.373, B:V.374
- Salt bridges: B:K.360
SO4.13: 3 residues within 4Å:- Chain C: R.96, K.97, R.129
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.97
- Water bridges: C:R.96
- Salt bridges: C:R.96, C:R.129
SO4.14: 6 residues within 4Å:- Chain B: W.72, D.79, R.80
- Chain C: W.72, R.76, R.80
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:D.79, B:R.80
- Water bridges: B:D.79, B:E.81
- Salt bridges: B:R.80, C:R.76, C:R.80
SO4.15: 4 residues within 4Å:- Chain C: K.360, T.372, N.373, V.374
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.373, C:N.373, C:V.374
- Salt bridges: C:K.360
SO4.19: 4 residues within 4Å:- Chain D: K.360, T.372, N.373, V.374
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.372, D:N.373, D:V.374
- Salt bridges: D:K.360
SO4.20: 4 residues within 4Å:- Chain D: S.157, E.158, E.159, Y.178
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.158, D:E.159, D:Y.178
- 3 x K: POTASSIUM ION(Non-covalent)
K.5: 6 residues within 4Å:- Chain A: D.329
- Chain B: K.323, Y.325
- Chain C: K.323, Y.325
- Chain D: D.329
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D- Metal complexes: A:D.329, C:Y.325, D:D.329
K.16: 3 residues within 4Å:- Chain C: D.304, D.332
- Ligands: NAD.12
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.304
K.21: 6 residues within 4Å:- Chain D: I.11, V.12, D.304, D.332, A.333
- Ligands: NAD.18
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:D.304
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neelon, K. et al., Crystal structure of a trapped catalytic intermediate suggests that forced atomic proximity drives the catalysis of mIPS. Biophys.J. (2011)
- Release Date
- 2012-01-11
- Peptides
- Myo-inositol-1-phosphate synthase (Ino1): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 3 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neelon, K. et al., Crystal structure of a trapped catalytic intermediate suggests that forced atomic proximity drives the catalysis of mIPS. Biophys.J. (2011)
- Release Date
- 2012-01-11
- Peptides
- Myo-inositol-1-phosphate synthase (Ino1): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D