SMTL ID : 3r20.1 (2 other biounits)

Crystal structure of cytidylate kinase from Mycobacterium smegmatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x DPO: DIPHOSPHATE(Non-covalent)

DPO.1: 11 residues within 4Å: Chain A: P.17, A.18, G.19, T.20, G.21, K.22, S.23, S.24, E.134, R.162, Q.166 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:P.17, A:G.19, A:T.20, A:G.21, A:G.21, A:K.22, A:S.23, A:S.24, A:E.134, A:Q.166, A:Q.166 Water bridges: A:K.22, A:S.23, A:S.23, A:R.162 Salt bridges: A:K.22, A:R.162

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: R.27, D.39, A.42, V.81, D.82, A.83, R.96 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.27, A:R.27, A:D.39, A:A.83, A:R.96 Water bridges: A:G.76, A:V.81, A:D.82, A:D.82

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.45 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.185, H.188 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.185, A:R.185 Salt bridges: A:R.185, A:H.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-04-13

Peptides

Cytidylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytidylate kinase

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