SMTL ID : 3r7t.1

Crystal Structure of Adenylosuccinate Synthetase from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 6 residues within 4Å: Chain A: V.272, G.297, V.298, S.299, T.300, R.304 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.298, A:S.299, A:S.299, A:T.300, A:T.300 Water bridges: A:G.297, A:G.297 Salt bridges: A:R.304 CIT.8: 6 residues within 4Å: Chain B: V.272, G.297, V.298, S.299, T.300, R.304 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:V.298, B:S.299, B:S.299, B:T.300, B:T.300 Water bridges: B:G.297, B:G.297 Salt bridges: B:R.304 CIT.15: 6 residues within 4Å: Chain C: V.272, G.297, V.298, S.299, T.300, R.304 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:V.298, C:S.299, C:S.299, C:T.300, C:T.300 Water bridges: C:G.297, C:G.297 Salt bridges: C:R.304 CIT.22: 6 residues within 4Å: Chain D: V.272, G.297, V.298, S.299, T.300, R.304 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:V.298, D:S.299, D:S.299, D:T.300, D:T.300 Water bridges: D:G.297, D:G.297 Salt bridges: D:R.304

8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 6 residues within 4Å: Chain A: E.284, D.285, K.288, D.335, G.336, F.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.288 Water bridges: A:K.288 PGE.3: 3 residues within 4Å: Chain A: Y.348, K.349, D.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.348, A:K.349 PGE.9: 6 residues within 4Å: Chain B: E.284, D.285, K.288, D.335, G.336, F.337 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.288 Water bridges: B:K.288 PGE.10: 3 residues within 4Å: Chain B: Y.348, K.349, D.359 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.348, B:K.349 PGE.16: 6 residues within 4Å: Chain C: E.284, D.285, K.288, D.335, G.336, F.337 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.288 Water bridges: C:K.288 PGE.17: 3 residues within 4Å: Chain C: Y.348, K.349, D.359 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.348, C:K.349 PGE.23: 6 residues within 4Å: Chain D: E.284, D.285, K.288, D.335, G.336, F.337 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.288 Water bridges: D:K.288 PGE.24: 3 residues within 4Å: Chain D: Y.348, K.349, D.359 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Y.348, D:K.349

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 2 residues within 4Å: Chain A: Y.234, P.235 No protein-ligand interaction detected (PLIP) PEG.6: 4 residues within 4Å: Chain A: L.152, P.154, K.190, N.193 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.193 PEG.11: 2 residues within 4Å: Chain B: Y.234, P.235 No protein-ligand interaction detected (PLIP) PEG.13: 4 residues within 4Å: Chain B: L.152, P.154, K.190, N.193 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.193 PEG.18: 2 residues within 4Å: Chain C: Y.234, P.235 No protein-ligand interaction detected (PLIP) PEG.20: 4 residues within 4Å: Chain C: L.152, P.154, K.190, N.193 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.193 PEG.25: 2 residues within 4Å: Chain D: Y.234, P.235 No protein-ligand interaction detected (PLIP) PEG.27: 4 residues within 4Å: Chain D: L.152, P.154, K.190, N.193 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.193

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: Y.98, T.201, M.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.98, A:T.201 Water bridges: A:D.202, A:R.205 GOL.12: 3 residues within 4Å: Chain B: Y.98, T.201, M.206 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.98, B:T.201 Water bridges: B:D.202, B:R.205 GOL.19: 3 residues within 4Å: Chain C: Y.98, T.201, M.206 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.98 Water bridges: C:D.202, C:R.205 GOL.26: 3 residues within 4Å: Chain D: Y.98, T.201, M.206 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.98 Water bridges: D:D.202, D:R.205

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 4 residues within 4Å: Chain A: F.90, E.91 Chain C: E.91 Ligands: CL.21 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain B: F.90, E.91 Chain D: E.91 Ligands: CL.28 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain A: E.91 Chain C: F.90, E.91 Ligands: CL.7 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain B: E.91 Chain D: F.90, E.91 Ligands: CL.14 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Adenylosuccinate Synthetase from Campylobacter jejuni. To be Published

Release Date

2011-04-20

Peptides

Adenylosuccinate synthetase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Adenylosuccinate synthetase