SMTL ID : 3r8r.1 (1 other biounit)

Transaldolase from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-10-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.6, N.28, K.84, F.130, R.133, A.164, S.165 Ligands: SO4.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.28, A:K.84, A:K.84, A:R.133, A:S.165 Water bridges: A:D.6, A:I.166 GOL.4: 8 residues within 4Å: Chain B: D.6, N.28, K.84, F.130, R.133, A.164, S.165 Ligands: SO4.3 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.28, B:K.84, B:K.84, B:R.133, B:S.165 Water bridges: B:D.6, B:I.166 GOL.8: 7 residues within 4Å: Chain E: D.6, N.28, K.84, F.130, A.164, S.165 Ligands: SO4.7 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:N.28, E:K.84, E:K.84, E:R.133, E:S.165 Water bridges: E:D.6, E:D.6, E:D.6, E:I.166 GOL.10: 7 residues within 4Å: Chain F: D.6, N.28, K.84, F.130, A.164, S.165 Ligands: SO4.9 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:N.28, F:K.84, F:K.84, F:S.165 Water bridges: F:D.6, F:D.6, F:D.6, F:I.166 GOL.12: 9 residues within 4Å: Chain G: D.6, N.28, L.31, K.84, F.130, R.133, A.164, S.165 Ligands: SO4.11 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:N.28, G:K.84, G:K.84, G:S.165 Water bridges: G:D.6, G:I.166

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.133, S.165, R.167 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.165 Water bridges: A:R.167 Salt bridges: A:R.133, A:R.167 SO4.3: 4 residues within 4Å: Chain B: R.133, S.165, R.167 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.165 Water bridges: B:R.167, B:R.167 Salt bridges: B:R.133, B:R.167 SO4.5: 3 residues within 4Å: Chain C: R.133, S.165, R.167 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.165 Salt bridges: C:R.133, C:R.167 SO4.6: 3 residues within 4Å: Chain D: R.133, S.165, R.167 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.165 Salt bridges: D:R.133, D:R.167 SO4.7: 4 residues within 4Å: Chain E: R.133, S.165, R.167 Ligands: GOL.8 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:S.165 Salt bridges: E:R.133, E:R.167 SO4.9: 4 residues within 4Å: Chain F: R.133, S.165, R.167 Ligands: GOL.10 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:S.165 Salt bridges: F:R.133, F:R.167 SO4.11: 4 residues within 4Å: Chain G: R.133, S.165, R.167 Ligands: GOL.12 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:S.165 Water bridges: G:R.167 Salt bridges: G:R.133, G:R.167 SO4.13: 3 residues within 4Å: Chain H: R.133, S.165, R.167 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:S.165 Water bridges: H:R.167 Salt bridges: H:R.133, H:R.167 SO4.14: 3 residues within 4Å: Chain I: R.133, S.165, R.167 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:S.165 Salt bridges: I:R.133, I:R.167 SO4.15: 3 residues within 4Å: Chain J: R.133, S.165, R.167 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:S.165 Salt bridges: J:R.133, J:R.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samland, A.K. et al., Conservation of structure and mechanism within the transaldolase enzyme family. Febs J. (2012)

Release Date

2012-02-08

Peptides

Transaldolase: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Transaldolase

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