SMTL ID : 3rf2.1

Crystal Structure of 30S Ribosomal Protein S8 from Aquifex Aeolicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.6, P.28, K.33, Q.91 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.33 Salt bridges: A:K.33 SO4.2: 4 residues within 4Å: Chain A: G.126, V.127, R.128, T.129 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.126, A:G.126, A:R.128, A:T.129 Salt bridges: A:R.128 SO4.3: 2 residues within 4Å: Chain A: K.15, N.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.112 Salt bridges: A:K.15 SO4.4: 1 residues within 4Å: Chain A: R.135 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.135, A:R.135 Salt bridges: A:R.135 SO4.5: 4 residues within 4Å: Chain A: K.118, G.119, G.120, R.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.120 Salt bridges: A:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Menichelli, E. et al., The Structure of Aquifex aeolicus Ribosomal Protein S8 Reveals a Unique Subdomain that Contributes to an Extremely Tight Association with 16S rRNA. J.Mol.Biol. (2012)

Release Date

2011-11-16

Peptides

30S ribosomal protein S8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

30S ribosomal protein S8