SMTL ID : 3rhh.1

Crystal structure of NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Bacillus halodurans C-125 complexed with NADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 15 residues within 4Å: Chain A: I.159, S.160, K.186, P.187, A.188, T.189, G.217, G.219, G.223, D.224, V.227, F.237, G.240, T.243, I.247 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.160, A:T.189, A:G.219, A:D.224, A:G.240, A:T.243 Water bridges: A:G.239 Salt bridges: A:K.186 NAP.3: 21 residues within 4Å: Chain B: I.159, S.160, P.161, F.162, K.186, P.187, A.188, T.189, G.217, G.219, S.220, G.223, D.224, V.227, F.237, T.238, G.239, G.240, T.243, R.246, I.247 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.160, B:F.162, B:T.189, B:T.189, B:G.219, B:D.224, B:G.240, B:T.243 Salt bridges: B:K.186 NAP.5: 20 residues within 4Å: Chain C: I.159, S.160, F.162, K.186, P.187, A.188, T.189, G.217, R.218, G.219, S.220, G.223, D.224, V.227, F.237, G.239, G.240, T.243, R.246, I.247 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:S.160, C:F.162, C:T.189, C:T.189, C:T.189, C:G.219, C:D.224, C:G.240, C:T.243, C:T.243 Water bridges: C:D.224, C:T.243 Salt bridges: C:K.186 NAP.7: 19 residues within 4Å: Chain D: I.159, S.160, P.161, F.162, K.186, P.187, A.188, T.189, G.217, R.218, G.219, G.223, D.224, V.227, F.237, G.239, G.240, T.243, R.246 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.160, D:F.162, D:T.189, D:R.218, D:D.224, D:D.224, D:G.240, D:T.243 Salt bridges: D:K.186

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.112, Y.164, R.292, E.445, R.446, G.447 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.164, A:R.446, A:G.447 Salt bridges: A:R.112, A:R.292 SO4.4: 6 residues within 4Å: Chain B: R.112, Y.164, R.292, E.445, R.446, G.447 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.294, B:E.445, B:R.446, B:G.447 Salt bridges: B:R.112, B:R.292 SO4.6: 6 residues within 4Å: Chain C: R.112, Y.164, R.292, E.445, R.446, G.447 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Y.164, C:R.446, C:G.447 Salt bridges: C:R.112, C:R.292 SO4.8: 6 residues within 4Å: Chain D: R.112, Y.164, R.292, E.445, R.446, G.447 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.446, D:G.447 Salt bridges: D:R.112, D:R.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Bacillus halodurans C-125 complexed with NADP. To be Published

Release Date

2011-05-18

Peptides

NADP-dependent glyceraldehyde-3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NADP-dependent glyceraldehyde-3-phosphate dehydrogenase

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