SMTL ID : 3rku.1

Substrate Fingerprint and the Structure of NADP+ Dependent Serine Dehydrogenase from Saccharomyces cerevisiae complexed with NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.40, A.41, S.42, A.43, G.44, I.45, A.67, R.68, R.69, L.94, D.95, I.96, T.97, N.122, A.123, G.124, K.125, T.146, L.173, G.174, S.175, Y.188, K.192, P.218, G.219, L.220, V.221, T.223, E.224, F.225 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:P.218, A:P.218 Hydrogen bonds: A:S.42, A:S.42, A:A.43, A:A.43, A:I.45, A:R.68, A:R.69, A:R.69, A:D.95, A:D.95, A:I.96, A:N.122, A:G.124, A:K.125, A:Y.188, A:K.192, A:V.221, A:V.221, A:T.223, A:E.224, A:F.225 Water bridges: A:G.46, A:R.68, A:R.68, A:R.68, A:T.97, A:N.122, A:E.224 Salt bridges: A:R.68, A:R.69 pi-Cation interactions: A:R.68 NAP.2: 30 residues within 4Å: Chain B: G.40, A.41, S.42, A.43, G.44, I.45, A.67, R.68, R.69, L.94, D.95, I.96, T.97, N.122, A.123, G.124, K.125, T.146, L.173, G.174, S.175, Y.188, K.192, P.218, G.219, L.220, V.221, T.223, E.224, F.225 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:P.218 Hydrogen bonds: B:S.42, B:S.42, B:A.43, B:A.43, B:I.45, B:R.68, B:R.69, B:R.69, B:D.95, B:D.95, B:I.96, B:T.97, B:N.122, B:G.124, B:K.125, B:Y.188, B:K.192, B:V.221, B:V.221, B:T.223, B:T.223, B:E.224, B:F.225 Water bridges: B:G.46, B:R.68, B:R.68, B:N.122, B:E.224, B:E.224 Salt bridges: B:R.68, B:R.69 pi-Cation interactions: B:R.68 NAP.3: 29 residues within 4Å: Chain C: G.40, S.42, A.43, G.44, I.45, A.67, R.68, R.69, L.94, D.95, I.96, T.97, N.122, A.123, G.124, K.125, T.146, L.173, G.174, S.175, Y.188, K.192, P.218, G.219, L.220, V.221, T.223, E.224, F.225 33 PLIP interactions: 33 interactions with chain C Hydrophobic interactions: C:P.218 Hydrogen bonds: C:S.42, C:S.42, C:S.42, C:A.43, C:A.43, C:I.45, C:R.68, C:R.69, C:R.69, C:D.95, C:I.96, C:T.97, C:A.123, C:G.124, C:K.125, C:K.192, C:V.221, C:V.221, C:T.223, C:T.223, C:E.224, C:F.225 Water bridges: C:G.46, C:R.68, C:R.68, C:R.68, C:T.97, C:E.224, C:Y.241 Salt bridges: C:R.68, C:R.69 pi-Cation interactions: C:R.68 NAP.4: 29 residues within 4Å: Chain D: G.40, S.42, A.43, G.44, I.45, A.67, R.68, R.69, L.94, D.95, I.96, T.97, N.122, A.123, G.124, K.125, T.146, L.173, G.174, S.175, Y.188, K.192, P.218, G.219, L.220, V.221, T.223, E.224, F.225 32 PLIP interactions: 32 interactions with chain D Hydrophobic interactions: D:P.218 Hydrogen bonds: D:S.42, D:S.42, D:A.43, D:A.43, D:I.45, D:R.68, D:R.68, D:R.69, D:R.69, D:D.95, D:I.96, D:T.97, D:N.122, D:G.124, D:K.125, D:K.192, D:V.221, D:V.221, D:T.223, D:T.223, D:E.224, D:F.225 Water bridges: D:G.46, D:R.68, D:R.68, D:E.224, D:Y.241, D:Y.241 Salt bridges: D:R.68, D:R.69 pi-Cation interactions: D:R.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huether, R. et al., Substrate Fingerprint and the Structure of NADP+ Dependent Serine Dehydrogenase from Saccharomyces cerevisiae complexed with NADP+. To be Published

Release Date

2011-06-01

Peptides

Oxidoreductase YMR226C: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Oxidoreductase YMR226C