SMTL ID : 3rmu.1 (1 other biounit)

Crystal structure of human Methylmalonyl-CoA epimerase, MCEE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 3 residues within 4Å: Chain A: H.8, H.80, E.130 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.8, A:H.80, A:E.130, H2O.1, H2O.1 CO.9: 3 residues within 4Å: Chain B: H.8, H.80, E.130 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.8, B:H.80, B:E.130, H2O.4, H2O.4

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: S.1, A.91, D.94, L.95 Chain B: I.26, L.27 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.94, A:D.94 EDO.3: 3 residues within 4Å: Chain A: S.1, D.94 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.94 EDO.4: 8 residues within 4Å: Chain A: A.20, K.24, V.31, S.32, E.33, A.34, V.45 Ligands: EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.24, A:S.32, A:A.34 Water bridges: A:A.21 EDO.5: 5 residues within 4Å: Chain A: L.57, P.65, I.66, H.79, H.80 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: K.24, N.25 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.24, A:N.25 Water bridges: A:E.17, A:A.21 EDO.7: 3 residues within 4Å: Chain A: N.48, L.49, G.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.48 EDO.8: 3 residues within 4Å: Chain A: N.89, V.107, P.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.89 EDO.10: 6 residues within 4Å: Chain A: I.26, L.27 Chain B: M.2, L.3, A.91, D.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.94 EDO.11: 11 residues within 4Å: Chain A: F.22 Chain B: S.102, L.119, H.120, P.121, K.122, D.123, C.124, G.125, G.126, V.127 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.122, B:D.123, B:D.123, B:G.125, B:G.126, B:V.127, B:V.127 EDO.12: 2 residues within 4Å: Chain B: G.4, R.5 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.5, B:R.5 EDO.13: 2 residues within 4Å: Chain B: K.24, N.25 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.24, B:N.25 EDO.14: 2 residues within 4Å: Chain B: P.38, E.39 No protein-ligand interaction detected (PLIP) EDO.15: 1 residues within 4Å: Chain B: N.89 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of human Methylmalonyl-CoA epimerase, MCEE. To be Published

Release Date

2011-05-11

Peptides

Methylmalonyl-CoA epimerase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methylmalonyl-CoA epimerase, mitochondrial

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