SMTL ID : 3rtw.1 (1 other biounit)

Nitrowillardiine bound to the ligand binding domain of GluA2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NWD: 3-(5-nitro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alanine(Non-covalent)

NWD.1: 15 residues within 4Å: Chain A: E.10, Y.58, P.86, L.87, T.88, R.93, L.135, G.138, S.139, T.140, T.171, L.189, E.190, M.193, Y.217 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.88, A:T.88, A:S.139, A:T.140, A:T.140, A:T.140, A:E.190, A:E.190 Water bridges: A:K.141, A:K.141, A:E.190 Salt bridges: A:R.93 NWD.4: 15 residues within 4Å: Chain B: E.10, Y.58, P.86, L.87, T.88, R.93, L.135, G.138, S.139, T.140, T.171, L.189, E.190, M.193, Y.217 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.88, B:S.139, B:S.139, B:T.140, B:T.140, B:T.140, B:E.190, B:E.190 Salt bridges: B:R.93

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: H.20 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.20 ZN.3: 2 residues within 4Å: Chain A: E.39, H.43 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.39, A:H.43 ZN.5: 2 residues within 4Å: Chain B: E.39, H.43 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.39, B:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poon, K. et al., Mechanisms of Modal Activation of GluA3 Receptors. Mol.Pharmacol. (2011)

Release Date

2011-05-18

Peptides

Glutamate receptor 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Glutamate receptor 2

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