SMTL ID : 3rwc.1 (1 other biounit)

Crystal structure of rhesus macaque MHC class I molecule Mamu-B*17-IW9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ILE- ARG- TYR- PRO- LYS- THR- PHE- GLY- TRP: Nef IW9 peptide from Protein Nef(Non-covalent)

ILE-ARG-TYR-PRO-LYS-THR-PHE-GLY-TRP.1: 31 residues within 4Å: Chain A: M.5, Y.7, Y.9, S.24, F.36, E.45, A.63, R.66, A.67, E.69, A.70, T.73, N.77, T.80, Y.84, I.95, K.97, Y.99, H.114, Y.118, Y.123, T.143, K.146, W.147, Y.152, R.155, F.156, Y.159, E.163, W.167, Y.171 44 PLIP interactions: 44 interactions with chain A Hydrophobic interactions: A:Y.7, A:T.73, A:N.77, A:I.95, A:Y.99, A:Y.118, A:Y.118, A:W.147, A:Y.152, A:Y.152, A:Y.159, A:Y.159, A:E.163, A:W.167 Hydrogen bonds: A:Y.7, A:S.24, A:S.24, A:S.24, A:R.66, A:E.69, A:E.69, A:N.77, A:N.77, A:Y.84, A:Y.99, A:Y.99, A:Y.152, A:Y.152, A:R.155, A:Y.171, A:Y.171 Water bridges: A:A.70, A:N.77, A:T.80, A:K.97, A:K.97, A:S.116 Salt bridges: A:E.45, A:K.146 pi-Stacking: A:Y.123, A:W.147, A:W.147, A:Y.152, A:F.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structural basis of diverse peptide accommodation by the rhesus macaque MHC class I molecule Mamu-B*17: insights into immune protection from simian immunodeficiency virus. J.Immunol. (2011)

Release Date

2012-03-21

Peptides

Major histocompatibility complex class I: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major histocompatibility complex class I

Beta-2-microglobulin

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