SMTL ID : 3s4t.6 (5 other biounits)

Crystal structure of putative amidohydrolase-2 (EFI-target 500288)from Polaromonas sp. JS666

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 6 residues within 4Å: Chain A: P.25, D.26, K.27 Chain B: T.239, T.240, K.242 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.239, B:T.240, B:T.240, B:T.240, B:K.242, A:D.26 EPE.2: 6 residues within 4Å: Chain A: T.239, T.240, K.242 Chain B: P.25, D.26, K.27 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.239, A:T.240, B:D.26 Salt bridges: A:K.242

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: F.23, P.62, R.166, N.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.167, A:N.167 Water bridges: A:R.166, A:R.166 SO4.4: 4 residues within 4Å: Chain A: R.42, R.45, L.46 Ligands: ACT.9 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.49 Salt bridges: A:R.42, A:R.45 SO4.5: 2 residues within 4Å: Chain A: R.247, D.251 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.251 Water bridges: A:K.248 Salt bridges: A:R.247 SO4.6: 2 residues within 4Å: Chain A: Q.132, L.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.132 SO4.7: 3 residues within 4Å: Chain A: R.78, R.115, E.119 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.78 SO4.8: 2 residues within 4Å: Chain A: K.323, R.326 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.323, A:R.326 SO4.12: 4 residues within 4Å: Chain B: R.42, R.45, L.46 Ligands: ACT.17 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.42, B:R.45 SO4.13: 3 residues within 4Å: Chain A: R.174 Chain B: L.169, S.171 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.171, B:S.171 Water bridges: B:S.171 Salt bridges: A:R.174 SO4.14: 2 residues within 4Å: Chain B: R.78, R.115 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.78 SO4.15: 2 residues within 4Å: Chain B: R.42, R.45 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.42 Salt bridges: B:R.45 SO4.16: 5 residues within 4Å: Chain B: F.23, P.62, R.166, N.167, F.189 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.167, B:N.167, B:N.167 Water bridges: B:R.166, B:R.166

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 9 residues within 4Å: Chain A: R.35, R.42, L.46, H.50, W.288, N.292, I.293, D.294 Ligands: SO4.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.288 Hydrogen bonds: A:I.293, A:D.294 Water bridges: A:H.50 Salt bridges: A:H.50 ACT.10: 2 residues within 4Å: Chain A: H.295 Chain B: K.238 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Water bridges: A:N.292, A:N.292 Salt bridges: A:H.295, B:K.238 ACT.11: 1 residues within 4Å: Chain A: H.232 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.232, A:K.248 ACT.17: 8 residues within 4Å: Chain B: R.35, R.42, L.46, W.288, N.292, I.293, D.294 Ligands: SO4.12 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.46, B:W.288 Hydrogen bonds: B:I.293, B:D.294 Water bridges: B:H.50 Salt bridges: B:H.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Crystal structure of putative amidohydrolase-2 (EFI-target 500288)from Polaromonas sp. JS666. To be published

Release Date

2011-08-24

Peptides

Amidohydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Amidohydrolase 2

Related Entries With Identical Sequence