SMTL ID : 3sbk.1

Russell's viper venom serine proteinase, RVV-V (PPACK-bound form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.227, T.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.227

1 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)

0G6.2: 16 residues within 4Å: Chain A: H.43, Y.154, V.157, D.174, T.175, C.176, G.178, S.180, A.195, G.196, G.197, S.198, E.199, C.201, A.208, V.209 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.154, A:Y.154, A:V.157, A:V.209 Hydrogen bonds: A:T.175, A:T.175, A:T.175, A:G.178, A:S.180, A:A.195, A:G.197, A:S.198, A:E.199, A:E.199 Salt bridges: A:D.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakayama, D. et al., Structural basis of coagulation factor V recognition for cleavage by RVV-V. Febs Lett. (2011)

Release Date

2011-09-07

Peptides

Vipera russelli proteinase RVV-V gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vipera russelli proteinase RVV-V gamma

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