SMTL ID : 3sdj.1 (7 other biounits)

Structure of RNase-inactive point mutant of oligomeric kinase/RNase Ire1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.65 Å

Oligo State

homo-14-mer

Ligands

14 x APJ: N~2~-1H-BENZIMIDAZOL-5-YL-N~4~-(3-CYCLOPROPYL-1H-PYRAZOL-5-YL)PYRIMIDINE-2,4-DIAMINE(Non-covalent)

APJ.1: 13 residues within 4Å: Chain A: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.50, A:A.61, A:L.106, A:L.165 Hydrogen bonds: A:C.109, A:C.109, A:N.112 APJ.2: 13 residues within 4Å: Chain B: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.50, B:A.61, B:L.106, B:L.165 Hydrogen bonds: B:C.109, B:C.109, B:N.112 APJ.3: 13 residues within 4Å: Chain C: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:V.50, C:A.61, C:L.106, C:L.165 Hydrogen bonds: C:C.109, C:C.109, C:N.112 APJ.4: 13 residues within 4Å: Chain D: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:V.50, D:A.61, D:L.106, D:L.165 Hydrogen bonds: D:C.109, D:C.109, D:N.112 APJ.5: 13 residues within 4Å: Chain E: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:V.50, E:A.61, E:L.106, E:L.165 Hydrogen bonds: E:C.109, E:C.109, E:N.112 APJ.6: 13 residues within 4Å: Chain F: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:V.50, F:A.61, F:L.106, F:L.165 Hydrogen bonds: F:C.109, F:C.109, F:N.112 APJ.7: 13 residues within 4Å: Chain G: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 8 PLIP interactions: 8 interactions with chain G Hydrophobic interactions: G:V.50, G:A.61, G:L.106, G:L.165 Hydrogen bonds: G:Y.43, G:C.109, G:C.109, G:N.112 APJ.8: 13 residues within 4Å: Chain H: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain H Hydrophobic interactions: H:V.50, H:A.61, H:L.106, H:L.165 Hydrogen bonds: H:C.109, H:C.109, H:N.112 APJ.9: 13 residues within 4Å: Chain I: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain I Hydrophobic interactions: I:V.50, I:A.61, I:L.106, I:L.165 Hydrogen bonds: I:C.109, I:C.109, I:N.112 APJ.10: 13 residues within 4Å: Chain J: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain J Hydrophobic interactions: J:V.50, J:A.61, J:L.106, J:L.165 Hydrogen bonds: J:C.109, J:C.109, J:N.112 APJ.11: 13 residues within 4Å: Chain K: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain K Hydrophobic interactions: K:V.50, K:A.61, K:L.106, K:L.165 Hydrogen bonds: K:C.109, K:C.109, K:N.112 APJ.12: 13 residues within 4Å: Chain L: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain L Hydrophobic interactions: L:V.50, L:A.61, L:L.106, L:L.165 Hydrogen bonds: L:C.109, L:C.109, L:N.112 APJ.13: 13 residues within 4Å: Chain M: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain M Hydrophobic interactions: M:V.50, M:A.61, M:L.106, M:L.165 Hydrogen bonds: M:C.109, M:C.109, M:N.112 APJ.14: 13 residues within 4Å: Chain N: L.41, Y.43, V.50, A.61, L.106, E.107, C.109, L.111, N.112, D.115, Q.162, L.165, D.189 7 PLIP interactions: 7 interactions with chain N Hydrophobic interactions: N:V.50, N:A.61, N:L.106, N:L.165 Hydrogen bonds: N:C.109, N:C.109, N:N.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korennykh, A.V. et al., Structural and functional basis for RNA cleavage by Ire1. Bmc Biol. (2011)

Release Date

2011-07-13

Peptides

Serine/threonine-protein kinase/endoribonuclease IRE1: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

Serine/threonine-protein kinase/endoribonuclease IRE1

Related Entries With Identical Sequence