SMTL ID : 3sqr.1

Crystal structure of laccase from Botrytis aclada at 1.67 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 12 residues within 4Å: Chain A: M.89, H.118, N.119, S.209, F.211, E.212, D.215, W.415, F.573, A.574, D.576 Ligands: NAG.7 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.215, A:T.216, A:D.576 Hydrogen bonds: A:S.209, A:E.212, A:D.215

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-MAN-MAN-MAN.2: 14 residues within 4Å: Chain A: R.68, E.69, Y.70, W.71, P.96, A.99, I.101, I.184, V.197, G.198, V.199, I.200, N.231, F.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.99, A:E.69, A:Y.70 Water bridges: A:D.196, A:T.67

3 x CU: COPPER (II) ION(Non-covalent)

CU.3: 5 residues within 4Å: Chain A: H.463, C.526, I.528, H.531, L.536 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.463, A:C.526, A:H.531 CU.4: 4 residues within 4Å: Chain A: H.170, H.466, H.468, H.525 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.170, A:H.466, A:H.468, A:H.525, H2O.10 CU.5: 4 residues within 4Å: Chain A: H.126, W.166, H.168, H.527 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.126, A:H.168, A:H.527, H2O.10

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain A: W.71, S.73, N.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.71, A:N.92 Water bridges: A:W.71 NAG.7: 8 residues within 4Å: Chain A: N.76, M.89, L.116, E.117, H.118, N.119 Ligands: NAG-NAG-BMA.1, NAG-NAG-BMA.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.119 Hydrogen bonds: A:N.76, A:E.117, A:H.118 NAG.8: 4 residues within 4Å: Chain A: D.391, E.392, Q.393, N.407 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.391, A:D.391, A:D.391, A:N.407 Water bridges: A:D.391 NAG.9: 3 residues within 4Å: Chain A: F.424, N.425, N.426 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.424, A:N.426 NAG.10: 5 residues within 4Å: Chain A: T.235, F.236, D.237, A.341, N.342 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.235 Water bridges: A:K.252, A:E.339, A:E.339, A:N.342

1 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.11: 4 residues within 4Å: Chain A: Y.298, P.372, A.374, S.375 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.299

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 4 residues within 4Å: Chain A: K.251, E.254, R.348, S.351 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.251, A:R.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipov, E. et al., Effect of the L499M mutation of the ascomycetous Botrytis aclada laccase on redox potential and catalytic properties. Acta Crystallogr.,Sect.D (2014)

Release Date

2012-07-11

Peptides

laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

laccase

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