SMTL ID : 3src.1

Structure of Pseudomonas aeruginosa PvdQ bound to NS2028

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.18, A.19, K.20 Chain B: P.40 Ligand excluded by PLIP EDO.2: 6 residues within 4Å: Chain A: A.42, I.45, V.46, W.125, R.127, I.129 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: R.49, E.51, R.136 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: E.65, L.66, D.67, D.152 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: A.158, P.159, G.161 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: A.64, Y.75, R.140, E.144 Chain B: M.30 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: E.144, G.145 Chain B: V.70, W.186 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain B: T.38, P.40, G.41, D.44 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain B: R.42, L.43, D.44, S.61, N.166, Q.167 Ligand excluded by PLIP EDO.10: 8 residues within 4Å: Chain B: I.214, A.218, V.223, P.228, A.229, L.230, P.286, L.287 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain B: A.313, L.484, T.486, K.493, R.495 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain B: Q.357, W.358, D.359, D.365, S.366, G.367 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain B: L.364, D.365, R.435, G.437, D.438, A.450 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain B: F.380, A.381, L.383, G.385, A.386, W.387 Ligand excluded by PLIP EDO.15: 8 residues within 4Å: Chain B: G.367, S.368, V.371, I.430, A.434, R.435, W.436, L.439 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain B: P.488, E.490, G.491, P.492, K.493, Q.532 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: L.40 Chain B: W.26, N.27, G.28, R.31, S.504 Ligand excluded by PLIP EDO.19: 2 residues within 4Å: Chain B: P.40, G.41 Ligand excluded by PLIP

1 x 28N: 8-bromo-4H-[1,2,4]oxadiazolo[3,4-c][1,4]benzoxazin-1-one(Non-covalent)

28N.18: 11 residues within 4Å: Chain A: T.138, L.141, L.142 Chain B: L.50, L.53, N.57, V.158, L.159, W.162, P.185, W.186 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.50, B:W.186, B:W.186 Hydrogen bonds: B:N.57 pi-Stacking: B:W.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drake, E.J. et al., Structural Characterization and High-Throughput Screening of Inhibitors of PvdQ, an NTN Hydrolase Involved in Pyoverdine Synthesis. Acs Chem.Biol. (2011)

Release Date

2011-09-21

Peptides

Acyl-homoserine lactone acylase pvdQ: A
Acyl-homoserine lactone acylase pvdQ: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyl-homoserine lactone acylase pvdQ

Acyl-homoserine lactone acylase pvdQ

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