SMTL ID : 3suv.1

Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with NHAc-DNJ

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.434 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.394, A:A.415, A:R.434 Salt bridges: A:R.434

1 x NOK: 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN(Non-covalent)

NOK.2: 11 residues within 4Å: Chain A: R.193, H.281, V.307, D.344, E.345, W.375, W.393, Y.418, W.433, W.464, E.466 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:D.344, A:W.375, A:W.393, A:W.464 Hydrogen bonds: A:R.193, A:R.193, A:D.344, A:D.344, A:Y.418, A:E.466 Water bridges: A:H.281, A:T.305, A:D.344, A:E.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sumida, T. et al., Gaining insight into the inhibition of glycoside hydrolase family 20 exo-beta-N-acetylhexosaminidases using a structural approach. Org.Biomol.Chem. (2012)

Release Date

2012-06-06

Peptides

Beta-hexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-hexosaminidase

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