- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.2: 16 residues within 4Å:- Chain A: G.165, Y.168, M.172, I.213, L.214, E.220, C.359, A.361, M.363, A.368, A.369, F.370, F.384, Y.386
- Chain B: G.208, D.209
14 PLIP interactions:11 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:Y.168, A:I.213, A:L.214, A:A.361, A:A.368, A:F.370, A:F.384, A:Y.386
- Hydrogen bonds: A:E.220, A:Y.386
- Water bridges: A:Y.386, B:D.209, B:D.209, B:D.209
LMT.10: 16 residues within 4Å:- Chain A: G.208, D.209
- Chain B: G.165, Y.168, M.172, I.213, L.214, E.220, C.359, A.361, M.363, A.368, A.369, F.370, F.384, Y.386
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:Y.168, B:I.213, B:L.214, B:A.361, B:A.368, B:F.370, B:F.384, B:Y.386
- Hydrogen bonds: B:E.220, B:Y.386
- Water bridges: B:Y.386, A:D.209, A:D.209, A:D.209, A:D.209
- 2 x DCQ: 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione(Non-covalent)
DCQ.3: 12 residues within 4Å:- Chain A: T.14, F.44, P.46, G.325, Y.326, V.358, F.360, K.394, F.397, Y.414
- Chain B: K.420
- Ligands: FAD.1
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:Y.326, A:V.358, A:V.358, A:F.360, A:F.397, A:F.397, A:Y.414
DCQ.11: 12 residues within 4Å:- Chain A: K.420
- Chain B: T.14, F.44, P.46, G.325, Y.326, V.358, F.360, K.394, F.397, Y.414
- Ligands: FAD.9
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:Y.326, B:V.358, B:V.358, B:F.360, B:F.397, B:F.397, B:Y.414
- Hydrogen bonds: B:Y.414
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: M.1, H.6, H.100, D.102
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:M.1, A:M.1
- Water bridges: A:H.100, A:H.100
- Salt bridges: A:H.6, A:H.100
SO4.12: 4 residues within 4Å:- Chain B: M.1, H.6, H.100, D.102
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:M.1, B:M.1
- Water bridges: B:H.100, B:H.100
- Salt bridges: B:H.6, B:H.100
- 8 x H2S: HYDROSULFURIC ACID(Non-covalent)
H2S.5: 5 residues within 4Å:- Chain A: F.164, G.165, C.359
- Ligands: H2S.7, H2S.8
No protein-ligand interaction detected (PLIP)H2S.6: 6 residues within 4Å:- Chain A: S.129, I.130, A.131, M.262, I.264, P.265
No protein-ligand interaction detected (PLIP)H2S.7: 4 residues within 4Å:- Chain A: C.359
- Ligands: FAD.1, H2S.5, H2S.8
No protein-ligand interaction detected (PLIP)H2S.8: 5 residues within 4Å:- Chain A: C.163, P.322
- Ligands: FAD.1, H2S.5, H2S.7
No protein-ligand interaction detected (PLIP)H2S.13: 5 residues within 4Å:- Chain B: F.164, G.165, C.359
- Ligands: H2S.15, H2S.16
No protein-ligand interaction detected (PLIP)H2S.14: 6 residues within 4Å:- Chain B: S.129, I.130, A.131, M.262, I.264, P.265
No protein-ligand interaction detected (PLIP)H2S.15: 4 residues within 4Å:- Chain B: C.359
- Ligands: FAD.9, H2S.13, H2S.16
No protein-ligand interaction detected (PLIP)H2S.16: 5 residues within 4Å:- Chain B: C.163, P.322
- Ligands: FAD.9, H2S.13, H2S.15
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherney, M.M. et al., Structure-activity characterization of sulfide:quinone oxidoreductase variants. J.Struct.Biol. (2012)
- Release Date
- 2012-05-16
- Peptides
- Sulfide-quinone reductase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 2 x DCQ: 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 8 x H2S: HYDROSULFURIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherney, M.M. et al., Structure-activity characterization of sulfide:quinone oxidoreductase variants. J.Struct.Biol. (2012)
- Release Date
- 2012-05-16
- Peptides
- Sulfide-quinone reductase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A