SMTL ID : 3t1i.1 (1 other biounit)

Crystal Structure of Human Mre11: Understanding Tumorigenic Mutations

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.40, H.42, D.80, H.267 Ligands: MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.40, A:H.42, A:D.80, A:H.267, H2O.4 MN.2: 5 residues within 4Å: Chain A: D.80, N.148, H.237, H.265 Ligands: MN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.80, A:H.237, A:H.265, H2O.19 MN.11: 5 residues within 4Å: Chain B: D.40, H.42, D.80, H.267 Ligands: MN.12 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.40, B:H.42, B:D.80, B:H.267, H2O.29 MN.12: 5 residues within 4Å: Chain B: D.80, N.148, H.237, H.265 Ligands: MN.11 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.80, B:H.237, B:H.265, H2O.29

2 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 2 residues within 4Å: Chain A: R.89 Ligands: GOL.5 No protein-ligand interaction detected (PLIP) DTT.4: 6 residues within 4Å: Chain A: C.269, K.270, I.271, A.272, H.303, K.318 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.318

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: C.166 Ligands: DTT.3 No protein-ligand interaction detected (PLIP) GOL.6: 2 residues within 4Å: Chain A: N.148, H.149 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.83, A:H.149 GOL.7: 4 residues within 4Å: Chain A: F.57, V.58, T.94, L.98 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.97 GOL.8: 4 residues within 4Å: Chain A: F.213, V.214, K.216, F.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.214, A:K.216, A:F.253 GOL.9: 3 residues within 4Å: Chain A: H.322, G.373, H.376 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.376 GOL.10: 3 residues within 4Å: Chain A: Q.110, E.112, G.192 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, Y.B. et al., Crystal structure of human mre11: understanding tumorigenic mutations. Structure (2011)

Release Date

2011-11-30

Peptides

Double-strand break repair protein MRE11A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Double-strand break repair protein MRE11A

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