SMTL ID : 3t2l.1

Crystal structure of a Putative cell adhesion protein (BF1858) from Bacteroides fragilis NCTC 9343 at 2.33 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: L.153, R.223 Ligands: GOL.3 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: R.18 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: L.153, R.223 Ligands: GOL.8 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: R.18 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.155, K.157, K.273 Chain B: D.296 Ligands: CL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.157, A:K.157 GOL.4: 7 residues within 4Å: Chain A: N.162, F.164, T.283, E.284, I.285 Chain B: M.256, L.257 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.162, A:I.285, A:I.285, B:L.257 GOL.5: 6 residues within 4Å: Chain A: S.108, Y.109, T.110, D.111, V.114, I.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.110, A:D.111 Water bridges: A:V.114 GOL.8: 5 residues within 4Å: Chain A: D.296 Chain B: E.155, K.157, K.273 Ligands: CL.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.157, B:K.157, B:K.273 GOL.9: 7 residues within 4Å: Chain A: M.256, L.257 Chain B: N.162, F.164, T.283, E.284, I.285 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.162, B:I.285, B:I.285, A:L.257 GOL.10: 6 residues within 4Å: Chain B: S.108, Y.109, T.110, D.111, V.114, I.115 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.110, B:T.110, B:D.111 Water bridges: B:V.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., A Distinct Type of Pilus from the Human Microbiome. Cell (2016)

Release Date

2011-08-10

Peptides

Putative cell adhesion protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative cell adhesion protein