SMTL ID : 3t3e.1

Glycogen phosphorylase b in complex with GlcClU

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x GPQ: 5-chloro-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione(Non-covalent)

GPQ.1: 14 residues within 4Å: Chain A: G.135, L.136, D.283, N.284, D.339, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.135, A:L.136, A:D.283, A:N.284, A:N.284, A:N.284, A:E.672, A:E.672, A:A.673, A:S.674, A:S.674, A:G.675 Water bridges: A:G.137, A:D.283, A:D.283 GPQ.2: 14 residues within 4Å: Chain B: G.135, L.136, D.283, N.284, D.339, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.135, B:L.136, B:D.283, B:N.284, B:N.284, B:N.284, B:H.377, B:Y.573, B:E.672, B:A.673, B:S.674, B:S.674, B:G.675 Water bridges: B:G.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kantsadi, A.L. et al., The sigma-Hole Phenomenon of Halogen Atoms Forms the Structural Basis of the Strong Inhibitory Potency of C5 Halogen Substituted Glucopyranosyl Nucleosides towards Glycogen Phosphorylase  b. Chemmedchem (2012)

Release Date

2012-02-15

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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