SMTL ID : 3t9j.1

Crystal structure HP-NAP from strain YS39 in apo form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-12-mer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.63, G.66, F.67, M.70, Y.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.63, A:Y.119 Water bridges: A:S.155 EDO.2: 5 residues within 4Å: Chain B: I.63, G.66, F.67, M.70, Y.119 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.63, B:Y.119 Water bridges: B:S.155 EDO.3: 5 residues within 4Å: Chain C: I.63, G.66, F.67, M.70, Y.119 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:I.63 Water bridges: C:S.155 EDO.4: 5 residues within 4Å: Chain D: I.63, G.66, F.67, M.70, Y.119 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:I.63 Water bridges: D:S.155 EDO.5: 5 residues within 4Å: Chain E: I.63, G.66, F.67, M.70, Y.119 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:I.63 Water bridges: E:S.155 EDO.6: 5 residues within 4Å: Chain F: I.63, G.66, F.67, M.70, Y.119 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:I.63, F:Y.119 Water bridges: F:S.155 EDO.7: 5 residues within 4Å: Chain G: I.63, G.66, F.67, M.70, Y.119 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:I.63 Water bridges: G:S.155 EDO.8: 5 residues within 4Å: Chain H: I.63, G.66, F.67, M.70, Y.119 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:I.63 Water bridges: H:S.155 EDO.9: 5 residues within 4Å: Chain I: I.63, G.66, F.67, M.70, Y.119 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:I.63, I:Y.119 Water bridges: I:S.155 EDO.10: 5 residues within 4Å: Chain J: I.63, G.66, F.67, M.70, Y.119 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:I.63, J:Y.119 Water bridges: J:S.155 EDO.11: 5 residues within 4Å: Chain K: I.63, G.66, F.67, M.70, Y.119 3 PLIP interactions: 3 interactions with chain K Hydrogen bonds: K:I.63, K:Y.119 Water bridges: K:S.155 EDO.12: 5 residues within 4Å: Chain L: I.63, G.66, F.67, M.70, Y.119 2 PLIP interactions: 2 interactions with chain L Hydrogen bonds: L:I.63 Water bridges: L:S.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsuruta, O. et al., A new crystal lattice structure of Helicobacter pylori neutrophil-activating protein (HP-NAP). Acta Crystallogr.,Sect.F (2012)

Release Date

2012-02-08

Peptides

Neutrophil-activating protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Neutrophil-activating protein

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