SMTL ID : 3te2.1

Crystal structure of HSC K16S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-pentamer

Ligands

5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 17 residues within 4Å: Chain A: I.48, F.49, K.64, M.67, T.147, K.151, F.197, I.198, T.199, S.200, G.201, F.202, E.203, H.204, A.207, N.208, I.211 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.64, A:K.151, A:H.204, A:H.204, A:N.208 PG4.4: 16 residues within 4Å: Chain B: I.45, F.49, K.64, M.67, T.147, K.151, I.198, T.199, S.200, G.201, F.202, H.204, A.207, N.208, I.211 Chain E: L.134 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.64, B:K.151, B:H.204, B:H.204 PG4.8: 16 residues within 4Å: Chain C: F.49, K.64, M.67, F.143, T.147, K.151, F.197, I.198, T.199, G.201, F.202, E.203, H.204, A.207, N.208, I.211 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.64, C:K.151, C:H.204, C:H.204 PG4.9: 17 residues within 4Å: Chain A: T.50, L.134 Chain D: I.45, F.49, K.64, M.67, T.147, K.151, I.198, T.199, S.200, G.201, F.202, H.204, A.207, N.208, I.211 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.64, D:K.151, D:H.204, D:N.208 PG4.11: 16 residues within 4Å: Chain E: I.45, F.49, K.64, T.147, K.151, F.197, I.198, T.199, S.200, G.201, F.202, E.203, H.204, A.207, N.208, I.211 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:K.64, E:K.151, E:F.202, E:H.204, E:N.208

7 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 7 residues within 4Å: Chain A: L.31, S.108, K.109, A.112, Y.113, V.116, I.120 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.113, A:Y.113, A:V.116, A:I.120 Hydrogen bonds: A:Y.113 BOG.3: 11 residues within 4Å: Chain A: L.119, L.123, M.209, Y.212, S.213, L.216, F.217, T.225, I.226, A.229, L.233 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.119, A:L.123, A:L.216, A:F.217, A:L.233 BOG.5: 9 residues within 4Å: Chain B: L.119, L.123, Y.212, S.213, L.216, F.217, I.226, A.229, L.233 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.119, B:L.216, B:F.217, B:I.226, B:L.233 BOG.6: 7 residues within 4Å: Chain B: L.31, S.108, K.109, A.112, Y.113, V.116, I.120 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.113, B:Y.113, B:V.116 Hydrogen bonds: B:S.108 BOG.7: 13 residues within 4Å: Chain A: S.182, T.184, I.188 Chain B: S.182, D.183, T.184, I.188 Chain C: S.182, T.184 Chain D: T.184 Chain E: S.182, T.184, I.188 16 PLIP interactions: 2 interactions with chain D, 7 interactions with chain B, 2 interactions with chain E, 2 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: D:T.184, B:T.184 Hydrogen bonds: D:T.184, B:D.183, B:T.184, B:T.184, E:S.182, A:S.182, C:S.182 Water bridges: B:S.182, B:D.183, B:D.183, E:S.182, A:T.184, C:S.182, C:S.182 BOG.10: 7 residues within 4Å: Chain D: L.31, S.108, K.109, A.112, Y.113, V.116, I.120 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.113, D:Y.113 Hydrogen bonds: D:S.108 BOG.12: 7 residues within 4Å: Chain E: L.31, S.108, K.109, A.112, Y.113, V.116, I.120 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:Y.113, E:Y.113, E:V.116 Hydrogen bonds: E:K.109, E:K.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czyzewski, B.K. et al., Identification and characterization of a bacterial hydrosulphide ion channel. Nature (2012)

Release Date

2012-03-07

Peptides

formate/nitrite transporter: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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formate/nitrite transporter