SMTL ID : 3th8.1

Structure of E. coli undecaprenyl diphosphate synthase complexed with BPH-1063

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

1 x TH9: (2Z)-4-({3-[3-(hexyloxy)phenyl]propyl}amino)-2-hydroxy-4-oxobut-2-enoic acid(Non-covalent)

TH9.1: 13 residues within 4Å: Chain A: M.25, D.26, G.27, N.28, G.29, R.39, H.43, G.46, A.47, A.69, F.70, I.141, W.221 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:N.28, A:A.47, A:I.141 Hydrogen bonds: A:G.27, A:N.28, A:N.28, A:G.29, A:R.39, A:F.70, A:F.70 Water bridges: A:R.30 Salt bridges: A:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., HIV-1 Integrase Inhibitor-Inspired Antibacterials Targeting Isoprenoid Biosynthesis. ACS Med Chem Lett (2012)

Release Date

2012-07-04

Peptides

Undecaprenyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Undecaprenyl pyrophosphate synthase

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