SMTL ID : 3tl2.1

Crystal structure of Bacillus anthracis str. Ames malate dehydrogenase in closed conformation.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: R.90, M.94, S.95, R.96, L.99, N.128, P.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.95, A:N.128 Water bridges: A:V.130 EDO.3: 7 residues within 4Å: Chain A: I.14, V.38, D.39, I.40, Y.73, A.86, I.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.39, A:Y.73 Water bridges: A:D.39 EDO.5: 7 residues within 4Å: Chain B: R.90, M.94, S.95, R.96, L.99, N.128, P.129 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.95, B:N.128 Water bridges: B:V.130 EDO.7: 7 residues within 4Å: Chain B: I.14, V.38, D.39, I.40, Y.73, A.86, I.110 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.39, B:Y.73 Water bridges: B:D.39 EDO.9: 7 residues within 4Å: Chain C: R.90, M.94, S.95, R.96, L.99, N.128, P.129 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.95, C:N.128 Water bridges: C:V.130 EDO.11: 7 residues within 4Å: Chain C: I.14, V.38, D.39, I.40, Y.73, A.86, I.110 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.39 Water bridges: C:D.39 EDO.13: 7 residues within 4Å: Chain D: R.90, M.94, S.95, R.96, L.99, N.128, P.129 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.95, D:N.128 Water bridges: D:V.130 EDO.15: 7 residues within 4Å: Chain D: I.14, V.38, D.39, I.40, Y.73, A.86, I.110 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.39 Water bridges: D:D.39

8 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 5 residues within 4Å: Chain A: P.129, V.130, D.131, A.132, V.310 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.131 Water bridges: A:V.130 SCN.4: 3 residues within 4Å: Chain A: L.204 Chain B: K.286, I.288 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.286 SCN.6: 5 residues within 4Å: Chain B: P.129, V.130, D.131, A.132, V.310 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.131 Water bridges: B:V.130 SCN.8: 3 residues within 4Å: Chain A: K.286, I.288 Chain B: L.204 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.286 SCN.10: 5 residues within 4Å: Chain C: P.129, V.130, D.131, A.132, V.310 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.131, C:D.131 Water bridges: C:V.130, C:D.186 SCN.12: 3 residues within 4Å: Chain C: L.204 Chain D: K.286, I.288 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.286 SCN.14: 5 residues within 4Å: Chain D: P.129, V.130, D.131, A.132, V.310 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.131, D:D.131 Water bridges: D:V.130, D:D.186 SCN.16: 3 residues within 4Å: Chain C: K.286, I.288 Chain D: L.204 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blus, B.J. et al., Crystal structure of Bacillus anthracis str. Ames malate dehydrogenase in closed conformation. TO BE PUBLISHED

Release Date

2011-09-21

Peptides

Malate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Malate dehydrogenase