SMTL ID : 3tlz.1

Microcin C7 self immunity protein MccF mutant W186F in complex with Adenosine Monophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 11 residues within 4Å: Chain A: I.117, G.118, G.119, Y.144, S.145, P.170, S.210, F.213, R.273, E.304, H.338 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.118, A:G.119, A:S.145, A:S.145, A:S.145, A:R.273, A:E.304, A:H.338 Water bridges: A:Y.144, A:D.146, A:D.146, A:S.272, A:E.304, A:E.304 Salt bridges: A:H.338 pi-Stacking: A:F.213, A:F.213 AMP.5: 9 residues within 4Å: Chain B: I.117, G.118, G.119, S.145, S.210, F.213, R.273, E.304, H.338 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.118, B:G.119, B:S.145, B:S.145, B:R.273, B:R.273 Water bridges: B:G.119, B:Y.144, B:D.146, B:D.146, B:S.272, B:H.338 Salt bridges: B:H.338 pi-Stacking: B:F.213, B:F.213

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: K.223, L.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.224 EDO.3: 5 residues within 4Å: Chain A: W.253, P.259, E.260, I.261, K.294 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.261, A:N.289, A:K.294 EDO.4: 6 residues within 4Å: Chain A: I.269, E.270, D.271, G.301, H.303, P.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.271 EDO.6: 5 residues within 4Å: Chain B: W.253, P.259, E.260, I.261, K.294 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.261, B:N.289 Water bridges: B:K.294, B:K.294 EDO.7: 6 residues within 4Å: Chain B: I.269, E.270, D.271, G.301, H.303, P.315 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.271, B:H.303 EDO.8: 3 residues within 4Å: Chain B: Y.106, D.130, A.133 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agarwal, V. et al., Structure and function of a serine carboxypeptidase adapted for degradation of the protein synthesis antibiotic microcin C7. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-02-29

Peptides

MccF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MccF