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SMTL ID : 3tlz.1
Microcin C7 self immunity protein MccF mutant W186F in complex with Adenosine Monophosphate
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.50 Å
Oligo State
homo-dimer
Ligands
2 x
AMP
:
ADENOSINE MONOPHOSPHATE
(Non-covalent)
AMP.1:
11 residues within 4Å:
Chain A:
I.117
,
G.118
,
G.119
,
Y.144
,
S.145
,
P.170
,
S.210
,
F.213
,
R.273
,
E.304
,
H.338
17
PLIP interactions
:
17 interactions with chain A
Hydrogen bonds:
A:G.118
,
A:G.119
,
A:S.145
,
A:S.145
,
A:S.145
,
A:R.273
,
A:E.304
,
A:H.338
Water bridges:
A:Y.144
,
A:D.146
,
A:D.146
,
A:S.272
,
A:E.304
,
A:E.304
Salt bridges:
A:H.338
pi-Stacking:
A:F.213
,
A:F.213
AMP.5:
9 residues within 4Å:
Chain B:
I.117
,
G.118
,
G.119
,
S.145
,
S.210
,
F.213
,
R.273
,
E.304
,
H.338
15
PLIP interactions
:
15 interactions with chain B
Hydrogen bonds:
B:G.118
,
B:G.119
,
B:S.145
,
B:S.145
,
B:R.273
,
B:R.273
Water bridges:
B:G.119
,
B:Y.144
,
B:D.146
,
B:D.146
,
B:S.272
,
B:H.338
Salt bridges:
B:H.338
pi-Stacking:
B:F.213
,
B:F.213
6 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.2:
2 residues within 4Å:
Chain A:
K.223
,
L.224
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:L.224
EDO.3:
5 residues within 4Å:
Chain A:
W.253
,
P.259
,
E.260
,
I.261
,
K.294
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:I.261
,
A:N.289
,
A:K.294
EDO.4:
6 residues within 4Å:
Chain A:
I.269
,
E.270
,
D.271
,
G.301
,
H.303
,
P.315
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:D.271
EDO.6:
5 residues within 4Å:
Chain B:
W.253
,
P.259
,
E.260
,
I.261
,
K.294
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:I.261
,
B:N.289
Water bridges:
B:K.294
,
B:K.294
EDO.7:
6 residues within 4Å:
Chain B:
I.269
,
E.270
,
D.271
,
G.301
,
H.303
,
P.315
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:D.271
,
B:H.303
EDO.8:
3 residues within 4Å:
Chain B:
Y.106
,
D.130
,
A.133
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Agarwal, V. et al., Structure and function of a serine carboxypeptidase adapted for degradation of the protein synthesis antibiotic microcin C7. Proc.Natl.Acad.Sci.USA (2012)
Release Date
2012-02-29
Peptides
MccF:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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