SMTL ID : 3tmw.2 (1 other biounit)

X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

16 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: Y.41 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: S.42, G.44, Q.139, I.142 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: N.83, G.85, R.86, T.87, S.90 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: H.33, D.105, I.106 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: K.51, F.56 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: N.83, P.97 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: R.91, N.92 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: R.86 Chain B: A.60, N.62 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain B: Y.41 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: S.42, G.44, Q.139, I.142 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: N.83, G.85, R.86, T.87, S.90 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain B: H.33, D.105, I.106 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: K.51, F.56 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain B: N.83, P.97 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain B: R.91, N.92 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain A: A.60, N.62 Chain B: R.86 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.9: 5 residues within 4Å: Chain A: S.78, C.82, N.83, S.90, R.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.90, A:R.91 NA.18: 5 residues within 4Å: Chain B: S.78, C.82, N.83, S.90, R.91 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.90, B:S.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kmetko, J. et al., Can radiation damage to protein crystals be reduced using small-molecule compounds?. Acta Crystallogr.,Sect.D (2011)

Release Date

2012-08-22

Peptides

Lysozyme C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lysozyme C

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