SMTL ID : 3tog.1 (1 other biounit)

HIV-1 Protease - Epoxydic Inhibitor Complex (pH 9 - Monoclinic Crystal form P21)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

homo-dimer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: K.14, I.15, G.16, G.17, I.63, I.64, E.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.17 DMS.3: 7 residues within 4Å: Chain B: K.14, I.15, G.16, G.17, I.63, I.64, E.65 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.17

1 x 079: (S)-N-((2S,3S,4R,5R)-4-amino-3,5-dihydroxy-1,6-diphenylhexan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide(Non-covalent)

079.2: 20 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, G.49, I.50, P.81, V.82, I.84 17 PLIP interactions: 10 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:A.28, A:P.81, A:V.82, A:I.84, B:L.23, B:I.50, B:P.81, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:D.25, A:G.27, A:D.29, A:G.48, B:G.27 Water bridges: A:G.48, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olajuyigbe, F.M. et al., Developing HIV-1 Protease Inhibitors through Stereospecific Reactions in Protein Crystals. Molecules (2016)

Release Date

2012-08-15

Peptides

Gag-Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gag-Pol polyprotein

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