SMTL ID : 3toh.1

HIV-1 Protease - Epoxydic Inhibitor Complex (pH 9 - Orthorombic Crystal form P212121)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

homo-dimer

Ligands

1 x 079: (S)-N-((2S,3S,4R,5R)-4-amino-3,5-dihydroxy-1,6-diphenylhexan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide(Non-covalent)

079.1: 17 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, G.48, G.49, I.50, P.81, I.84 Chain B: R.8, L.23, D.25, G.27, G.49, I.50, P.81, V.82 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:P.81, B:L.23, B:P.81, B:P.81, B:V.82 Hydrogen bonds: A:D.25, A:G.27, A:D.29, A:G.48, B:G.27 Water bridges: A:I.50

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: K.14, I.15, G.16, G.17, I.63, I.64, E.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.14, A:G.17 DMS.3: 3 residues within 4Å: Chain A: K.45, M.46, I.47 No protein-ligand interaction detected (PLIP) DMS.4: 8 residues within 4Å: Chain B: K.14, I.15, G.16, G.17, I.63, I.64, E.65, K.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olajuyigbe, F.M. et al., Developing HIV-1 Protease Inhibitors through Stereospecific Reactions in Protein Crystals. Molecules (2016)

Release Date

2012-08-15

Peptides

Gag-Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gag-Pol polyprotein

Related Entries With Identical Sequence