SMTL ID : 3trt.1

Crystal structure of stabilised vimentin coil2 fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.34 Ligands: SO4.6 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.34 SO4.2: 2 residues within 4Å: Chain A: Q.16 Ligands: NH4.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.16 SO4.5: 2 residues within 4Å: Chain B: T.59, R.62 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.59 Salt bridges: B:R.62 SO4.6: 4 residues within 4Å: Chain A: F.37 Chain B: K.36, L.40 Ligands: SO4.1 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.36

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.7: 3 residues within 4Å: Chain A: S.3, K.4 Chain B: K.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.4 GOL.8: 1 residues within 4Å: Chain B: K.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.4, B:K.4

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.4: 1 residues within 4Å: Ligands: SO4.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chernyatina, A.A. et al., Stabilization of vimentin coil2 fragment via an engineered disulfide. J.Struct.Biol. (2012)

Release Date

2012-02-01

Peptides

Vimentin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vimentin