SMTL ID : 3tsd.2 (1 other biounit)

Crystal Structure of Inosine-5'-monophosphate Dehydrogenase from Bacillus anthracis str. Ames complexed with XMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-tetramer

Ligands

4 x XMP: XANTHOSINE-5'-MONOPHOSPHATE(Non-covalent)

XMP.1: 14 residues within 4Å: Chain A: A.73, M.75, G.329, S.330, C.332, T.334, D.365, G.366, G.367, G.388, S.389, Y.412, G.414, M.415 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.330, A:G.367, A:G.388, A:S.389, A:S.389, A:M.415 Water bridges: A:N.304, A:I.368, A:I.368, A:S.389, A:S.389 XMP.4: 14 residues within 4Å: Chain B: A.73, M.75, G.329, S.330, C.332, T.334, D.365, G.366, G.367, G.388, S.389, Y.412, G.414, M.415 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.330, B:G.367, B:G.388, B:S.389, B:S.389, B:M.415 Water bridges: B:N.304, B:I.368, B:I.368, B:S.389, B:S.389 XMP.7: 14 residues within 4Å: Chain C: A.73, M.75, G.329, S.330, C.332, T.334, D.365, G.366, G.367, G.388, S.389, Y.412, G.414, M.415 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.330, C:G.367, C:G.388, C:S.389, C:S.389, C:M.415 Water bridges: C:N.304, C:I.368, C:I.368, C:S.389, C:S.389 XMP.10: 14 residues within 4Å: Chain D: A.73, M.75, G.329, S.330, C.332, T.334, D.365, G.366, G.367, G.388, S.389, Y.412, G.414, M.415 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.330, D:G.367, D:G.388, D:S.389, D:S.389, D:M.415 Water bridges: D:N.304, D:I.368, D:I.368, D:S.389, D:S.389

4 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.2: 7 residues within 4Å: Chain A: I.161, T.163, D.166, T.182, I.187, I.207 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.187 TAR.5: 7 residues within 4Å: Chain B: I.161, T.163, D.166, T.182, I.187, I.207 Ligands: SO4.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.187 TAR.8: 7 residues within 4Å: Chain C: I.161, T.163, D.166, T.182, I.187, I.207 Ligands: SO4.9 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.187 TAR.11: 7 residues within 4Å: Chain D: I.161, T.163, D.166, T.182, I.187, I.207 Ligands: SO4.12 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:I.187

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: T.163, N.164, R.165 Ligands: TAR.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.163, A:R.165 Water bridges: A:R.165 SO4.6: 4 residues within 4Å: Chain B: T.163, N.164, R.165 Ligands: TAR.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.163, B:R.165 Water bridges: B:R.165 SO4.9: 4 residues within 4Å: Chain C: T.163, N.164, R.165 Ligands: TAR.8 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.163, C:R.165 Water bridges: C:R.165 SO4.12: 4 residues within 4Å: Chain D: T.163, N.164, R.165 Ligands: TAR.11 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.163, D:R.165 Water bridges: D:R.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makowska-Grzyska, M. et al., Bacillus anthracis inosine 5'-monophosphate dehydrogenase in action: the first bacterial series of structures of phosphate ion-, substrate-, and product-bound complexes. Biochemistry (2012)

Release Date

2011-10-05

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

Inosine-5'-monophosphate dehydrogenase

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