SMTL ID : 3ttr.1

Crystal structure of C-lobe of bovine lactoferrin complexed with Lidocaine at 2.27 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: G.131, L.132, N.135, E.323, T.326, A.327, N.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.330 NAG-NAG.2: 6 residues within 4Å: Chain A: L.93, N.204, D.205, W.208, E.214, Q.244 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 6 residues within 4Å: Chain A: Q.23, S.24, N.27, H.272, Q.273, L.276 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.276 Hydrogen bonds: A:N.27, A:Q.273

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.229, R.237 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.229, A:R.237

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 2 residues within 4Å: Chain A: G.312, E.318 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.318, A:E.318, H2O.5 ZN.6: 1 residues within 4Å: Chain A: H.247 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.247, H2O.6

1 x FE: FE (III) ION(Non-covalent)

FE.7: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.8: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.122

1 x LQZ: 2-(diethylamino)-N-(2,6-dimethylphenyl)ethanamide(Non-covalent)

LQZ.9: 4 residues within 4Å: Chain A: P.88, T.89, L.310, G.311 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.88, A:T.89, A:L.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of C-lobe of bovine lactoferrin complexed with Lidocaine at 2.27 A resolution. To be Published

Release Date

2011-10-19

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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