SMTL ID : 3tw7.1

Structure of Rhizobium etli pyruvate carboxylase T882A crystallized without acetyl coenzyme-A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: M.545, R.546, E.548, R.748, D.779 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:M.545, A:R.546, A:E.548, A:D.779 MG.4: 4 residues within 4Å: Chain B: M.545, R.546, E.548, D.779 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:M.545, B:E.548, B:D.779 MG.7: 5 residues within 4Å: Chain C: M.545, R.546, E.548, R.748, D.779 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:M.545, C:R.546, C:E.548, C:D.779 MG.10: 4 residues within 4Å: Chain D: M.545, R.546, E.548, D.779 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:M.545, D:E.548, D:D.779

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: D.560, K.729, H.758, H.760 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.560, A:H.758, A:H.760 ZN.5: 5 residues within 4Å: Chain B: D.560, K.729, H.758, H.760, Q.794 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.560, B:H.758, B:H.760 ZN.8: 4 residues within 4Å: Chain C: D.560, K.729, H.758, H.760 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.560, C:H.758, C:H.760 ZN.11: 5 residues within 4Å: Chain D: D.560, K.729, H.758, H.760, Q.794 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.560, D:H.758, D:H.760

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: Y.998, P.999, K.1000, V.1001 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: Y.639, Y.998, P.999, K.1000, V.1001 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: Y.998, P.999, K.1000, V.1001 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain D: Y.639, Y.998, P.999, K.1000, V.1001 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lietzan, A.D. et al., Interaction between the biotin carboxyl carrier domain and the biotin carboxylase domain in pyruvate carboxylase from Rhizobium etli. Biochemistry (2011)

Release Date

2011-10-12

Peptides

Pyruvate carboxylase protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Pyruvate carboxylase protein

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