SMTL ID : 3tzh.1 (2 other biounits)

Crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase (FabG)(F187A) from Vibrio cholerae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

34 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Ligands: UNX.2, UNX.6 Ligand excluded by PLIP UNX.2: 3 residues within 4Å: Ligands: UNX.1, UNX.3, UNX.6 Ligand excluded by PLIP UNX.3: 4 residues within 4Å: Chain A: G.154 Ligands: UNX.2, UNX.4, UNX.6 Ligand excluded by PLIP UNX.4: 4 residues within 4Å: Chain A: D.99 Ligands: UNX.3, UNX.5, UNX.6 Ligand excluded by PLIP UNX.5: 1 residues within 4Å: Ligands: UNX.4 Ligand excluded by PLIP UNX.6: 6 residues within 4Å: Chain A: D.99 Ligands: UNX.1, UNX.2, UNX.3, UNX.4, UNX.7 Ligand excluded by PLIP UNX.7: 1 residues within 4Å: Ligands: UNX.6 Ligand excluded by PLIP UNX.8: 4 residues within 4Å: Chain A: M.150, G.151, N.152, Q.210 Ligand excluded by PLIP UNX.9: 1 residues within 4Å: Chain A: M.150 Ligand excluded by PLIP UNX.14: 1 residues within 4Å: Ligands: UNX.15 Ligand excluded by PLIP UNX.15: 2 residues within 4Å: Chain B: D.99 Ligands: UNX.14 Ligand excluded by PLIP UNX.16: 2 residues within 4Å: Chain B: G.154 Ligands: UNX.17 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain B: D.99 Ligands: UNX.16, UNX.18 Ligand excluded by PLIP UNX.18: 1 residues within 4Å: Ligands: UNX.17 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain B: M.248 Ligands: UNX.20 Ligand excluded by PLIP UNX.20: 5 residues within 4Å: Chain B: M.150, N.152, Q.210 Ligands: UNX.19, UNX.21 Ligand excluded by PLIP UNX.21: 5 residues within 4Å: Chain B: M.150, G.151, N.152, Q.210 Ligands: UNX.20 Ligand excluded by PLIP UNX.27: 2 residues within 4Å: Ligands: UNX.28, UNX.32 Ligand excluded by PLIP UNX.28: 3 residues within 4Å: Ligands: UNX.27, UNX.29, UNX.32 Ligand excluded by PLIP UNX.29: 4 residues within 4Å: Chain C: G.154 Ligands: UNX.28, UNX.30, UNX.32 Ligand excluded by PLIP UNX.30: 4 residues within 4Å: Chain C: D.99 Ligands: UNX.29, UNX.31, UNX.32 Ligand excluded by PLIP UNX.31: 1 residues within 4Å: Ligands: UNX.30 Ligand excluded by PLIP UNX.32: 6 residues within 4Å: Chain C: D.99 Ligands: UNX.27, UNX.28, UNX.29, UNX.30, UNX.33 Ligand excluded by PLIP UNX.33: 1 residues within 4Å: Ligands: UNX.32 Ligand excluded by PLIP UNX.34: 4 residues within 4Å: Chain C: M.150, G.151, N.152, Q.210 Ligand excluded by PLIP UNX.35: 1 residues within 4Å: Chain C: M.150 Ligand excluded by PLIP UNX.40: 1 residues within 4Å: Ligands: UNX.41 Ligand excluded by PLIP UNX.41: 2 residues within 4Å: Chain D: D.99 Ligands: UNX.40 Ligand excluded by PLIP UNX.42: 2 residues within 4Å: Chain D: G.154 Ligands: UNX.43 Ligand excluded by PLIP UNX.43: 3 residues within 4Å: Chain D: D.99 Ligands: UNX.42, UNX.44 Ligand excluded by PLIP UNX.44: 1 residues within 4Å: Ligands: UNX.43 Ligand excluded by PLIP UNX.45: 2 residues within 4Å: Chain D: M.248 Ligands: UNX.46 Ligand excluded by PLIP UNX.46: 5 residues within 4Å: Chain D: M.150, N.152, Q.210 Ligands: UNX.45, UNX.47 Ligand excluded by PLIP UNX.47: 5 residues within 4Å: Chain D: M.150, G.151, N.152, Q.210 Ligands: UNX.46 Ligand excluded by PLIP

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 3 residues within 4Å: Chain A: R.22, G.23, K.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.23 Salt bridges: A:K.26 SO4.11: 2 residues within 4Å: Chain A: G.85, G.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.86 SO4.12: 3 residues within 4Å: Chain A: K.106, E.107 Chain C: K.126 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:E.107 Water bridges: A:E.107, A:E.108, C:K.126 Salt bridges: C:K.126 SO4.22: 2 residues within 4Å: Chain B: K.106, E.107 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:E.107 Water bridges: B:E.108, B:E.108 Salt bridges: D:K.126 SO4.23: 3 residues within 4Å: Chain B: R.22, G.23, K.26 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.23 Salt bridges: B:K.26 SO4.24: 5 residues within 4Å: Chain A: S.5, R.35 Chain B: S.5, F.7, R.35 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.5, A:S.5, B:S.5, B:S.5 Salt bridges: A:R.35, B:R.35 SO4.36: 3 residues within 4Å: Chain C: R.22, G.23, K.26 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.23 Salt bridges: C:K.26 SO4.37: 2 residues within 4Å: Chain C: G.85, G.86 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.86 SO4.38: 3 residues within 4Å: Chain A: K.126 Chain C: K.106, E.107 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:E.107 Water bridges: C:E.108, A:K.126 Salt bridges: A:K.126 SO4.48: 2 residues within 4Å: Chain D: K.106, E.107 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:E.107 Water bridges: D:E.108, D:E.108 Salt bridges: B:K.126 SO4.49: 3 residues within 4Å: Chain D: R.22, G.23, K.26 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.23 Salt bridges: D:K.26 SO4.50: 5 residues within 4Å: Chain C: S.5, R.35 Chain D: S.5, F.7, R.35 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:S.5, D:S.5, C:S.5, C:S.5 Salt bridges: D:R.35, C:R.35

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 8 residues within 4Å: Chain A: G.19, A.20, S.21, R.22, T.42, A.43, T.44, S.45 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.21, A:S.21, A:R.22, A:T.42, A:T.44, A:S.45 Water bridges: A:R.22 GOL.25: 8 residues within 4Å: Chain B: G.19, A.20, S.21, R.22, T.42, A.43, T.44, A.94 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.21, B:S.21, B:S.21, B:R.22, B:R.22 Water bridges: B:G.19, B:R.22, B:L.65 GOL.26: 7 residues within 4Å: Chain B: G.19, R.22, G.23, I.24, G.25, N.93, T.193 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.19, B:I.24, B:G.25, B:N.93 Water bridges: B:R.22, B:D.194 GOL.39: 8 residues within 4Å: Chain C: G.19, A.20, S.21, R.22, T.42, A.43, T.44, S.45 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.21, C:S.21, C:R.22, C:T.42, C:T.44, C:S.45 Water bridges: C:R.22 GOL.51: 8 residues within 4Å: Chain D: G.19, A.20, S.21, R.22, T.42, A.43, T.44, A.94 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:S.21, D:S.21, D:S.21, D:R.22, D:R.22 Water bridges: D:G.19, D:R.22, D:L.65 GOL.52: 7 residues within 4Å: Chain D: G.19, R.22, G.23, I.24, G.25, N.93, T.193 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.19, D:I.24, D:G.25, D:N.93 Water bridges: D:R.22, D:D.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2011-10-19

Peptides

3-oxoacyl-[acyl-carrier protein] reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
A

D
F

3-oxoacyl-[acyl-carrier protein] reductase

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