SMTL ID : 3tzq.1 (1 other biounit)

Crystal structure of a short-chain type dehydrogenase/reductase from Mycobacterium marinum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: S.146, T.148, Y.153, P.189, G.190, L.191, F.209, L.250 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.146, A:A.147 Water bridges: A:V.192 GOL.4: 7 residues within 4Å: Chain B: L.43, V.64, D.65, L.66, A.94, H.95, V.117 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.64, B:D.65, B:L.66 GOL.8: 8 residues within 4Å: Chain B: L.254 Chain D: S.146, T.148, Y.153, P.189, G.190, L.191, F.209 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:P.189

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain B: S.96, Y.159 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.96, B:S.96, B:S.156 EDO.3: 4 residues within 4Å: Chain B: G.56, R.57, G.58, A.59 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.56, B:G.58, B:A.59 EDO.5: 5 residues within 4Å: Chain C: L.251 Chain D: R.171, G.241, Q.242 Ligands: EDO.6 5 PLIP interactions: 1 interactions with chain C, 3 interactions with chain D, 1 interactions with chain A Water bridges: C:D.247, D:Q.242, A:H.150 Hydrogen bonds: D:R.171, D:Q.242 EDO.6: 4 residues within 4Å: Chain D: R.171, Q.242, V.243 Ligands: EDO.5 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:R.171 Water bridges: D:Q.242, C:V.243

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain B: H.150, L.251 Chain D: H.150, L.251 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-10-05

Peptides

Short-chain type dehydrogenase/reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
D

D
C

Short-chain type dehydrogenase/reductase

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