SMTL ID : 3u06.1

Crystal structure of the kinesin-14 NcdG347D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: R.66, R.68, P.69, L.71, S.118, Q.147, T.148, G.149, S.150, G.151, K.152, T.153, Y.154, V.159 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.149, A:S.150, A:G.151, A:K.152, A:T.153, A:T.153, A:Y.154 Water bridges: A:R.66, A:R.66, A:P.116, A:K.152, A:K.152, A:Y.154, A:D.292 Salt bridges: A:K.152 pi-Stacking: A:Y.154, A:Y.154 ADP.7: 13 residues within 4Å: Chain B: R.66, R.68, P.69, L.71, Q.147, T.148, G.149, S.150, G.151, K.152, T.153, Y.154, V.159 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.149, B:S.150, B:S.150, B:G.151, B:K.152, B:T.153, B:T.153, B:Y.154 Salt bridges: B:K.152 pi-Stacking: B:Y.154, B:Y.154

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.153 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.153, H2O.4, H2O.4, H2O.4, H2O.4

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: L.235, D.236, N.238, H.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.238, A:H.239 GOL.4: 5 residues within 4Å: Chain A: E.49, N.52, T.53, D.56, Y.138 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.52, A:T.53, A:T.53, A:Y.138 GOL.5: 10 residues within 4Å: Chain A: N.44, M.45, R.47, K.48, L.135, D.136, Y.180, W.185, Y.187, S.284 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.44, A:R.47, A:K.48, A:D.136, A:D.136, A:S.284 GOL.6: 9 residues within 4Å: Chain A: R.47, Q.132, S.176, G.179, Y.180, L.183 Chain B: Q.39, Q.42, E.46 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.132, A:Y.180, B:Q.42 GOL.8: 9 residues within 4Å: Chain A: L.50, T.53 Chain B: H.51, V.54, M.55, R.58, S.88, F.110, D.111 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.51, B:S.88, B:S.88, B:D.111 Water bridges: B:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H.L. et al., Neck-motor interactions trigger rotation of the kinesin stalk. Sci Rep (2012)

Release Date

2012-03-07

Peptides

Protein claret segregational: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein claret segregational