SMTL ID : 3u1u.1 (1 other biounit)

Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: H.29, T.75 Chain B: T.66, A.67, K.68, R.93 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:T.75, A:T.75, B:A.67, B:K.68 Salt bridges: A:H.29, B:R.93 Water bridges: B:R.93 SO4.2: 5 residues within 4Å: Chain A: H.29, R.76, T.77, N.78, K.79 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.76, A:N.78, A:K.79 Salt bridges: A:H.29 SO4.18: 4 residues within 4Å: Chain B: V.69, Y.70, Q.71, R.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.71 Salt bridges: B:R.76 SO4.19: 6 residues within 4Å: Chain A: R.21, N.99 Chain B: I.46, R.56, R.90 Ligands: UNX.25 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Water bridges: B:R.90, A:R.21, A:R.21, A:R.21 Salt bridges: B:R.56, B:R.90, A:R.21 Hydrogen bonds: A:N.99

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: M.114, F.115, G.118, M.119, Q.120 Ligands: UNX.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.118, A:G.118 Water bridges: A:F.115

23 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 3 residues within 4Å: Chain A: W.27, M.30, E.136 Ligand excluded by PLIP UNX.5: 3 residues within 4Å: Chain A: S.20, H.22, R.26 Ligand excluded by PLIP UNX.6: 6 residues within 4Å: Chain A: L.83, R.84, H.85, D.88, R.90, F.92 Ligand excluded by PLIP UNX.7: 1 residues within 4Å: Chain A: G.39 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: T.123, E.126 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: R.90, V.91 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: S.5, Q.6, P.7 Ligand excluded by PLIP UNX.11: 4 residues within 4Å: Chain A: S.9, F.107, M.108, K.111 Ligand excluded by PLIP UNX.12: 2 residues within 4Å: Chain A: R.21, N.99 Ligand excluded by PLIP UNX.13: 5 residues within 4Å: Chain A: W.27, M.30, P.31, F.33, T.36 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain A: G.118 Ligands: GOL.3 Ligand excluded by PLIP UNX.15: 6 residues within 4Å: Chain A: R.18, L.19, V.42, R.43, V.97, S.98 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain A: G.45, F.92, F.96 Ligand excluded by PLIP UNX.17: 2 residues within 4Å: Chain A: M.119, Q.120 Ligand excluded by PLIP UNX.20: 1 residues within 4Å: Chain B: Q.100 Ligand excluded by PLIP UNX.21: 2 residues within 4Å: Chain B: Y.55, F.96 Ligand excluded by PLIP UNX.22: 1 residues within 4Å: Chain B: G.39 Ligand excluded by PLIP UNX.23: 1 residues within 4Å: Chain B: S.20 Ligand excluded by PLIP UNX.24: 2 residues within 4Å: Chain B: R.21, G.73 Ligand excluded by PLIP UNX.25: 4 residues within 4Å: Chain A: G.73 Chain B: I.46, R.90 Ligands: SO4.19 Ligand excluded by PLIP UNX.26: 3 residues within 4Å: Chain B: K.135, E.136, A.137 Ligand excluded by PLIP UNX.27: 4 residues within 4Å: Chain B: G.45, I.46, G.47, V.54 Ligand excluded by PLIP UNX.28: 3 residues within 4Å: Chain B: T.66, A.67, N.78 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain. to be published

Release Date

2012-04-04

Peptides

RNA polymerase-associated protein RTF1 homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA polymerase-associated protein RTF1 homolog

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