SMTL ID : 3u4a.1

From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 5 residues within 4Å: Chain A: R.587, F.598 Chain B: Y.262, E.488 Ligands: BGC.5 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.587, A:R.587, B:E.488 Water bridges: A:R.587, A:F.598 BGC-BGC.2: 5 residues within 4Å: Chain A: Y.262, E.488 Chain B: R.587, F.598 Ligands: BGC.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.587, B:R.587, A:E.488

2 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.3: 13 residues within 4Å: Chain A: N.55, D.84, F.128, R.142, K.181, H.182, M.225, F.228, N.261, Y.262, M.292, E.488 Ligands: BGC-BGC.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.55, A:R.142, A:R.142, A:K.181, A:K.181, A:H.182, A:H.182, A:N.261, A:E.488 BGC.5: 13 residues within 4Å: Chain B: N.55, D.84, F.128, R.142, K.181, H.182, M.225, F.228, N.261, Y.262, M.292, E.488 Ligands: BGC-BGC.1 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.55, B:R.142, B:R.142, B:K.181, B:H.182, B:N.261, B:E.488 Water bridges: B:K.181

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: D.664, V.666, E.713, P.714, G.715, F.717 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.664, A:V.666, H2O.1, H2O.3, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McAndrew, R.P. et al., From soil to structure: a novel dimeric family 3-beta--glucosidase isolated from compost using metagenomic analysis. To be Published

Release Date

2013-04-10

Peptides

JMB19063: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

JMB19063