SMTL ID : 3u4g.1

The Structure of CobT from Pyrococcus horikoshii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.26, A.28, P.145, G.146, G.147, T.148, Q.231 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.26, A:V.27, A:G.146, A:T.148, A:Q.231 Water bridges: A:T.144, A:G.147, A:T.149, A:T.149 SO4.2: 3 residues within 4Å: Chain A: R.86, Y.90, N.102 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.102 Water bridges: A:R.86, A:R.86, A:A.92 Salt bridges: A:R.86 SO4.5: 7 residues within 4Å: Chain B: S.26, A.28, P.145, G.146, G.147, T.148, Q.231 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.26, B:V.27, B:G.146, B:T.148, B:Q.231 Water bridges: B:T.144, B:G.147, B:T.149, B:T.149 SO4.6: 3 residues within 4Å: Chain B: R.86, Y.90, N.102 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.102 Water bridges: B:R.86, B:R.86, B:A.92 Salt bridges: B:R.86

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 10 residues within 4Å: Chain A: V.27, A.28, G.29, T.38, P.58, V.59, T.60, H.64, T.66, P.67 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.60 ACY.4: 4 residues within 4Å: Chain A: D.107, R.109, R.110, E.182 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.110 Salt bridges: A:R.109 ACY.7: 10 residues within 4Å: Chain B: V.27, A.28, G.29, T.38, P.58, V.59, T.60, H.64, T.66, P.67 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:T.60 ACY.8: 4 residues within 4Å: Chain B: D.107, R.109, R.110, E.182 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.110 Salt bridges: B:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The Structure of CobT from Pyrococcus horikoshii. TO BE PUBLISHED

Release Date

2011-12-21

Peptides

NaMN:DMB phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NaMN:DMB phosphoribosyltransferase