SMTL ID : 3u7k.1

Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x MDB: (S)-N-(cyclopentylmethyl)-N-(2-(hydroxyamino)-2-oxoethyl)-2-(3-(2-methoxyphenyl)ureido)-3,3-dimethylbutanamide(Non-covalent)

MDB.1: 17 residues within 4Å: Chain A: Q.45, R.56, S.57, G.58, V.59, G.60, Q.65, E.109, G.110, C.111, L.112, Y.147, H.154, E.155, H.158, E.185 Ligands: ZN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.109, A:E.109, A:L.112, A:H.154, A:E.185 Hydrogen bonds: A:S.57, A:S.57, A:V.59, A:Q.65, A:L.112, A:E.155

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: Q.65, C.111, H.154, H.158 Ligands: MDB.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.154, A:H.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S.J. et al., Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-06-27

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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