SMTL ID : 3u9e.1

The crystal structure of a possible phosphate acetyl/butaryl transferase (from Listeria monocytogenes EGD-e) in complex with CoA.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-dimer

Ligands

4 x COA: COENZYME A(Non-covalent)

COA.1: 7 residues within 4Å: Chain A: L.105, R.112, L.116, L.117, M.139, N.140 Chain B: K.181 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.112, A:L.117, A:L.117, A:N.140 Water bridges: A:L.105, A:R.112 Salt bridges: A:R.112, B:K.181, B:K.181 COA.2: 13 residues within 4Å: Chain A: K.92, P.96, T.97, A.138, M.139, V.259, I.268, S.269, S.270, R.271 Chain B: E.177, K.219 Ligands: GOL.10 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:T.97, A:T.97, A:T.97, A:S.270, A:R.271, B:E.177, B:E.177 Water bridges: A:K.92 Salt bridges: A:K.92, A:R.271, A:R.271, B:K.219 COA.11: 7 residues within 4Å: Chain B: L.105, K.106, R.112, L.116, L.117, M.139, N.140 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.112, B:R.112, B:L.117, B:L.117, B:N.140 Salt bridges: B:K.106, A:K.181 COA.12: 12 residues within 4Å: Chain A: K.219 Chain B: P.96, T.97, A.98, A.138, M.139, V.259, I.268, S.269, S.270, R.271 Ligands: ARG.13 9 PLIP interactions: 6 interactions with chain B, 2 Ligand-Ligand interactions, 1 interactions with chain A Hydrogen bonds: B:K.92, B:T.97, B:T.97, B:A.98, B:R.271, R.13, R.13 Salt bridges: B:R.271, A:K.219

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: K.6, R.8, D.124, I.125, P.126 Ligand excluded by PLIP

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: V.20, K.85, E.86, A.87, D.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.85 GOL.5: 5 residues within 4Å: Chain A: V.248, Y.249, S.274, N.277 Chain B: E.214 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.274, A:S.274, A:N.277 GOL.6: 4 residues within 4Å: Chain A: E.153, L.156, A.157, H.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.153, A:H.160 GOL.7: 9 residues within 4Å: Chain A: G.25, D.27, G.50, K.51, T.68, D.69, T.70, A.71, F.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.27, A:D.27, A:T.68 GOL.8: 4 residues within 4Å: Chain A: A.142, P.143, K.144, E.147 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.141, A:A.142 GOL.9: 1 residues within 4Å: Chain A: H.129 No protein-ligand interaction detected (PLIP) GOL.10: 6 residues within 4Å: Chain A: A.138, M.139, V.141 Chain B: V.175, M.182 Ligands: COA.2 No protein-ligand interaction detected (PLIP) GOL.14: 7 residues within 4Å: Chain B: V.30, V.31, K.92, G.93, F.94, S.269 Ligands: GOL.20 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.30, B:K.92, B:K.92 GOL.15: 12 residues within 4Å: Chain B: G.25, A.26, D.27, G.50, K.51, T.68, D.69, T.70, A.71, A.74, F.94, I.95 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.27, B:D.27, B:T.68 GOL.16: 8 residues within 4Å: Chain A: E.238 Chain B: K.144, K.148, P.183, S.184, E.187, P.235, N.236 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.144, B:K.148, B:E.187, B:N.236, A:E.238 Water bridges: B:S.184 GOL.17: 3 residues within 4Å: Chain B: K.85, E.86, D.88 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.88 GOL.18: 4 residues within 4Å: Chain B: R.8, D.124, I.125, P.126 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.8 Water bridges: B:F.10 GOL.19: 4 residues within 4Å: Chain B: K.6, T.127, Y.128, H.129 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.6, B:Y.128, B:H.129 Water bridges: B:I.211 GOL.20: 5 residues within 4Å: Chain B: K.92, F.94, I.95, P.96 Ligands: GOL.14 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.92, B:K.92

1 x ARG: ARGININE(Non-covalent)

ARG.13: 12 residues within 4Å: Chain A: A.174, A.206, K.219 Chain B: Q.119, N.241, K.245, S.257, I.268, S.269, S.270, D.273 Ligands: COA.12 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.119, B:N.241, B:N.241, B:S.257, B:I.268, B:I.268, B:S.270 Salt bridges: B:K.245, B:D.273, A:K.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a possible phosphate acetyl/butaryl transferase (from Listeria monocytogenes EGD-e) in complex with CoA. To be Published

Release Date

2011-11-16

Peptides

possible phosphate acetyl/butaryl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

possible phosphate acetyl/butaryl transferase

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