SMTL ID : 3u9y.1

Crystal structure of human tankyrase 2 catalytic domain in complex with olaparib

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.159, H.162, C.167, C.170 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.159, A:H.162, A:C.167, A:C.170

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.55, H.57, R.58, D.59, K.145, Q.148 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.58, A:D.59, A:Q.148 Water bridges: A:R.55, A:K.145, A:K.145, A:N.210 Salt bridges: A:R.55, A:H.57, A:K.145 SO4.3: 4 residues within 4Å: Chain A: N.68, R.69, P.238, E.239 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.68, A:E.239 Water bridges: A:N.68 Salt bridges: A:R.69

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: E.56, H.57, G.60, G.61, G.65, I.66, F.67 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.56, A:H.57, A:F.67, A:F.67 Water bridges: A:G.65

1 x 09L: 4-(3-{[4-(cyclopropylcarbonyl)piperazin-1-yl]carbonyl}-4-fluorobenzyl)phthalazin-1(2H)-one(Non-covalent)

09L.5: 21 residues within 4Å: Chain A: F.108, H.109, G.110, F.113, I.117, G.121, F.122, D.123, H.126, A.127, Y.128, G.136, I.137, Y.138, F.139, A.140, K.145, S.146, Y.149, I.153, E.216 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.113, A:I.117, A:H.126, A:Y.128, A:Y.128, A:Y.128, A:Y.138, A:Y.138, A:A.140, A:K.145, A:Y.149, A:Y.149, A:I.153, A:E.216 Hydrogen bonds: A:G.110, A:G.110, A:D.123, A:Y.128, A:Y.138 pi-Stacking: A:Y.149 Halogen bonds: A:H.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narwal, M. et al., Structural basis of selective inhibition of human tankyrases. J.Med.Chem. (2012)

Release Date

2012-01-25

Peptides

Tankyrase-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tankyrase-2

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