SMTL ID : 3ua3.1

Crystal Structure of Protein Arginine Methyltransferase PRMT5 in complex with SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: P.369, L.370, Y.379, F.382, Y.389, G.417, G.418, G.419, P.422, I.423, E.453, K.454, S.479, D.480, M.481, E.502, L.503, C.516 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.379, A:G.417, A:G.419, A:K.454, A:D.480 Water bridges: A:N.455 Salt bridges: A:K.388 pi-Cation interactions: A:K.454 SAH.2: 18 residues within 4Å: Chain B: P.369, Y.379, F.382, E.383, K.388, Y.389, G.417, G.418, G.419, I.423, E.453, K.454, N.455, S.479, D.480, M.481, E.502, L.503 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.379 Hydrogen bonds: B:Y.379, B:Y.379, B:G.417, B:E.453, B:K.454, B:D.480 Water bridges: B:K.454 Salt bridges: B:K.388 pi-Cation interactions: B:K.454

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, L. et al., Structural insights into protein arginine symmetric dimethylation by PRMT5. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-12-14

Peptides

Protein arginine N-methyltransferase 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 5

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