- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NOS: INOSINE(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 8 residues within 4Å:- Chain A: P.19, G.20, R.87, V.88, G.89, T.90
- Chain F: R.43
- Ligands: NOS.1
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain F- Hydrogen bonds: A:G.20, A:V.88, A:T.90
- Water bridges: A:D.21, A:D.21, F:R.43
- Salt bridges: A:R.87, F:R.43
SO4.5: 8 residues within 4Å:- Chain B: P.19, G.20, R.87, V.88, G.89, T.90
- Chain E: R.43
- Ligands: NOS.4
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain E- Hydrogen bonds: B:G.20, B:V.88, B:T.90
- Water bridges: B:D.21, B:D.21, E:R.43
- Salt bridges: B:R.87, E:R.43
SO4.8: 8 residues within 4Å:- Chain C: P.19, G.20, R.87, V.88, G.89, T.90
- Chain D: R.43
- Ligands: NOS.7
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:G.20, C:V.88, C:T.90
- Water bridges: C:D.21, C:D.21, D:R.43
- Salt bridges: C:R.87, D:R.43
SO4.11: 8 residues within 4Å:- Chain C: R.43
- Chain D: P.19, G.20, R.87, V.88, G.89, T.90
- Ligands: NOS.10
8 PLIP interactions:2 interactions with chain C, 6 interactions with chain D- Water bridges: C:R.43, D:D.21, D:D.21
- Salt bridges: C:R.43, D:R.87
- Hydrogen bonds: D:G.20, D:V.88, D:T.90
SO4.14: 8 residues within 4Å:- Chain B: R.43
- Chain E: P.19, G.20, R.87, V.88, G.89, T.90
- Ligands: NOS.13
8 PLIP interactions:6 interactions with chain E, 2 interactions with chain B- Hydrogen bonds: E:G.20, E:V.88, E:T.90
- Water bridges: E:D.21, E:D.21, B:R.43
- Salt bridges: E:R.87, B:R.43
SO4.17: 8 residues within 4Å:- Chain A: R.43
- Chain F: P.19, G.20, R.87, V.88, G.89, T.90
- Ligands: NOS.16
8 PLIP interactions:6 interactions with chain F, 2 interactions with chain A- Hydrogen bonds: F:G.20, F:V.88, F:T.90
- Water bridges: F:D.21, F:D.21, A:R.43
- Salt bridges: F:R.87, A:R.43
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: T.119, L.188, K.191
- Chain E: Y.173
- Chain F: Y.160, R.161, E.162
5 PLIP interactions:2 interactions with chain F, 3 interactions with chain E- Hydrogen bonds: F:Y.160, F:E.162, E:Y.173, E:Y.173
- Water bridges: E:K.169
GOL.6: 7 residues within 4Å:- Chain B: T.119, L.188, K.191
- Chain D: Y.173
- Chain E: Y.160, R.161, E.162
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: D:Y.173, D:Y.173, E:Y.160, E:E.162
- Water bridges: D:K.169
GOL.9: 7 residues within 4Å:- Chain C: T.119, L.188, K.191
- Chain D: Y.160, R.161, E.162
- Chain F: Y.173
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain D- Hydrogen bonds: F:Y.173, F:Y.173, D:Y.160, D:E.162
- Water bridges: F:K.169
GOL.12: 7 residues within 4Å:- Chain B: Y.173
- Chain C: Y.160, R.161, E.162
- Chain D: T.119, L.188, K.191
5 PLIP interactions:1 interactions with chain D, 2 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: D:T.119, B:Y.173, C:Y.160, C:E.162
- Water bridges: B:K.169
GOL.15: 7 residues within 4Å:- Chain A: Y.173
- Chain B: Y.160, R.161, E.162
- Chain E: T.119, L.188, K.191
5 PLIP interactions:2 interactions with chain B, 2 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: B:Y.160, B:E.162, A:Y.173, E:T.119
- Water bridges: A:K.169
GOL.18: 7 residues within 4Å:- Chain A: Y.160, R.161, E.162
- Chain C: Y.173
- Chain F: T.119, L.188, K.191
5 PLIP interactions:2 interactions with chain C, 2 interactions with chain A, 1 interactions with chain F- Hydrogen bonds: C:Y.173, A:Y.160, A:E.162, F:T.119
- Water bridges: C:K.169
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dessanti, P. et al., Structural basis of the substrate specificity of Bacillus cereus adenosine phosphorylase. Acta Crystallogr.,Sect.D (2012)
- Release Date
- 2012-02-29
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NOS: INOSINE(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dessanti, P. et al., Structural basis of the substrate specificity of Bacillus cereus adenosine phosphorylase. Acta Crystallogr.,Sect.D (2012)
- Release Date
- 2012-02-29
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A