SMTL ID : 3ubu.1

Crystal structure of agkisacucetin, a GpIb-binding snaclec (snake C-type lectin) that inhibits platelet

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-oligomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.58, G.110, R.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.58, A:S.58 Salt bridges: A:R.112

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain B: K.22, S.64, H.118, Y.119 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.22 Water bridges: B:L.65, B:H.118 GOL.3: 6 residues within 4Å: Chain B: E.12, H.14, H.45, S.46, E.49, K.123 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Water bridges: A:S.87, B:S.46 Hydrogen bonds: B:S.46, B:K.123, B:K.123 GOL.4: 3 residues within 4Å: Chain B: N.75, K.90, W.92 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.75, B:N.75, B:K.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, Y. et al., Crystal structure of agkisacucetin, a Gpib-binding snake C-type lectin that inhibits platelet adhesion and aggregation. Proteins (2012)

Release Date

2012-04-11

Peptides

Agglucetin subunit alpha-1: A
Agglucetin subunit beta-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Agglucetin subunit alpha-1

Agglucetin subunit beta-2