SMTL ID : 3ugf.1 (1 other biounit)

Crystal structure of a 6-SST/6-SFT from Pachysandra terminalis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 6 residues within 4Å: Chain A: N.51, D.53, N.54, V.56, W.57, N.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.54, A:N.51, A:N.54 Water bridges: A:R.313, A:N.59 Hydrophobic interactions: A:V.56

1 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG.2: 2 residues within 4Å: Chain A: Y.177, N.178 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 6 residues within 4Å: Chain A: A.407, A.408, R.410, Q.429, R.454, N.521 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.454

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.4: 7 residues within 4Å: Chain A: Q.246, R.248, Y.250, R.277, N.400, T.402, T.403 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.250, A:R.277, A:R.277, A:Q.464 Hydrogen bonds: A:R.248, A:R.248

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: Y.48, Y.50, G.63, H.64, L.76, P.77, L.78 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.48, A:H.64, A:P.77 Water bridges: A:L.76, A:L.76 GOL.6: 4 residues within 4Å: Chain A: S.16, W.17, R.19, H.486 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.16 Water bridges: A:H.486 GOL.7: 3 residues within 4Å: Chain A: S.308, E.309, V.310 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.309, A:V.310 GOL.8: 4 residues within 4Å: Chain A: R.103, M.105, Y.123, K.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.103, A:K.192, A:K.192 Water bridges: A:R.103 GOL.9: 5 residues within 4Å: Chain A: Y.177, L.196, L.197, E.198, L.200 No protein-ligand interaction detected (PLIP) GOL.10: 3 residues within 4Å: Chain A: S.352, K.532, W.534 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.352, A:S.352, A:K.532, A:K.532 Water bridges: A:R.349, A:S.352, A:W.534

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 3 residues within 4Å: Chain A: Y.163, S.165, N.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.163, A:N.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammens, W. et al., Crystal structure of 6-SST/6-SFT from Pachysandra terminalis, a plant fructan biosynthesizing enzyme in complex with its acceptor substrate 6-kestose. Plant J. (2012)

Release Date

2011-11-30

Peptides

Sucrose:(Sucrose/fructan) 6-fructosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sucrose:(Sucrose/fructan) 6-fructosyltransferase

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