SMTL ID : 3uil.1

Crystal Structure of the complex of PGRP-S with lauric acid at 2.2 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain C: P.151, T.152 Chain D: S.36, H.37, T.38, A.39, Y.71, H.146 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:P.151, D:Y.71 Water bridges: C:T.152, C:L.153

1 x DAO: LAURIC ACID(Non-covalent)

DAO.2: 4 residues within 4Å: Chain B: A.133, L.134 Chain D: R.31, R.138 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:A.133, B:L.134 Salt bridges: D:R.31, D:R.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, P. et al., Structural basis of the binding of fatty acids to peptidoglycan recognition protein, PGRP-S through second binding site. Arch.Biochem.Biophys. (2013)

Release Date

2012-07-11

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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