SMTL ID : 3uji.1

Crystal structure of anti-HIV-1 V3 Fab 2558 in complex with MN peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-FUC.1: 11 residues within 4Å: Chain A: Y.2, E.3, L.94, V.96, V.97 Chain B: R.38, M.40, E.46, N.61, S.63, F.64 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.64 Hydrogen bonds: B:R.38, B:R.38, B:E.46 Water bridges: A:Y.2, A:Y.2, A:E.3, B:S.63

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: A.79 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorny, M.K. et al., Human Anti-V3 HIV-1 Monoclonal Antibodies Encoded by the VH5-51/VL Lambda Genes Define a Conserved Antigenic Structure. Plos One (2011)

Release Date

2011-12-28

Peptides

Light chain of anti-HIV-1 V3 monoclonal antibody 2558: A
Fab region of the heavy chain of anti-HIV-1 V3 monoclonal antibody 2558: B
Envelope glycoprotein gp160: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
P

Light chain of anti-HIV-1 V3 monoclonal antibody 2558

Fab region of the heavy chain of anti-HIV-1 V3 monoclonal antibody 2558

Envelope glycoprotein gp160

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