- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.11 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 2 residues within 4Å:- Chain A: D.44, K.56
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.44
PEG.4: 2 residues within 4Å:- Chain A: K.33, S.49
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.49
PEG.9: 1 residues within 4Å:- Chain B: K.56
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.56
PEG.14: 1 residues within 4Å:- Chain C: K.56
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.56
PEG.18: 2 residues within 4Å:- Chain D: D.44, K.56
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.56
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.6: 5 residues within 4Å:- Chain A: D.148, F.150, N.152, W.155, D.156
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.148, A:F.150, A:D.156, H2O.1, H2O.1
CA.10: 4 residues within 4Å:- Chain B: D.148, F.150, N.152, D.156
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.148, B:F.150, B:D.156, H2O.1
CA.15: 4 residues within 4Å:- Chain C: D.148, F.150, N.152, D.156
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.148, C:F.150, C:D.156, H2O.1, H2O.1
CA.19: 4 residues within 4Å:- Chain D: D.148, F.150, N.152, D.156
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.148, D:F.150, D:D.156, H2O.1, H2O.1
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.7: 4 residues within 4Å:- Chain A: E.146, D.148, D.156, H.161
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.146, A:D.148, A:D.156, A:H.161, H2O.1
MN.11: 5 residues within 4Å:- Chain B: E.146, D.148, D.156, H.161, S.171
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.146, B:D.148, B:D.156, B:H.161
MN.16: 4 residues within 4Å:- Chain C: E.146, D.148, D.156, H.161
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.146, C:D.148, C:D.156, C:H.161, H2O.1, H2O.1
MN.20: 4 residues within 4Å:- Chain D: E.146, D.148, D.156, H.161
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.146, D:D.148, D:D.156, D:H.161, H2O.1
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shetty, K.N. et al., Affinity of a galactose-specific legume lectin from Dolichos lablab to adenine revealed by X-ray cystallography. Iubmb Life (2013)
- Release Date
- 2012-11-14
- Peptides
- Legume lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.11 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shetty, K.N. et al., Affinity of a galactose-specific legume lectin from Dolichos lablab to adenine revealed by X-ray cystallography. Iubmb Life (2013)
- Release Date
- 2012-11-14
- Peptides
- Legume lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D