SMTL ID : 3unx.1

Bond length analysis of asp, glu and his residues in subtilisin Carlsberg at 1.26A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: K.22, D.75, P.85, S.86 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.22, A:D.75, A:S.86, A:S.86 GOL.2: 5 residues within 4Å: Chain A: R.185, G.257, S.258, Y.261, Y.262 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.185 GOL.3: 9 residues within 4Å: Chain A: L.95, G.99, S.100, G.101, Y.103, I.106, L.125, G.126, G.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.100, A:G.101 Water bridges: A:G.127 GOL.4: 7 residues within 4Å: Chain A: D.171, A.193, E.194, L.195, E.196, R.246 Ligands: NA.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.195, A:E.196, A:R.246

2 x CA: CALCIUM ION(Non-covalent)

CA.5: 7 residues within 4Å: Chain A: Q.2, D.41, L.74, N.76, T.78, G.79, V.80 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.41, A:D.41, A:L.74, A:T.78, A:V.80 CA.7: 2 residues within 4Å: Chain A: P.5, Y.6 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 8 residues within 4Å: Chain A: A.168, K.169, Y.170, D.171, V.173, A.175, E.194 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.169, A:V.173, A:A.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fisher, S.J. et al., Protonation-state determination in proteins using high-resolution X-ray crystallography: effects of resolution and completeness. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-06-27

Peptides

Subtilisin Carlsberg: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Subtilisin Carlsberg

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