SMTL ID : 3ux8.1

Crystal structure of UvrA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.454, C.457, C.477, C.480 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.454, A:C.457, A:C.477, A:C.480 ZN.3: 4 residues within 4Å: Chain B: C.454, C.457, C.477, C.480 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.454, B:C.457, B:C.477, B:C.480

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 14 residues within 4Å: Chain A: Y.193, R.198, T.202, H.336, N.337, V.356, S.357, G.358, S.359, G.360, K.361, S.362, T.363, G.623 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:Y.193, A:R.198, A:N.337, A:G.358, A:G.358, A:S.359, A:G.360, A:K.361, A:S.362, A:S.362, A:T.363 Water bridges: A:R.198, A:S.357, A:K.361, A:K.361, A:S.362, A:D.624 Salt bridges: A:K.361 pi-Stacking: A:H.336, A:H.336 ADP.4: 14 residues within 4Å: Chain B: Y.193, R.198, T.202, H.336, N.337, V.356, S.357, G.358, S.359, G.360, K.361, S.362, T.363, G.623 24 PLIP interactions: 24 interactions with chain B Hydrogen bonds: B:Y.193, B:R.198, B:T.202, B:N.337, B:G.358, B:G.358, B:S.359, B:G.360, B:K.361, B:S.362, B:S.362, B:T.363, B:T.363 Water bridges: B:Y.193, B:Y.193, B:R.198, B:S.357, B:K.361, B:K.361, B:S.362, B:D.624 Salt bridges: B:K.361 pi-Stacking: B:H.336, B:H.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pakotiprapha, D. et al., Structure and mechanism of the UvrA-UvrB DNA damage sensor. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-02-08

Peptides

Excinuclease ABC, A subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Excinuclease ABC, A subunit